Evidence map›Paper›PMID 31353023›Full record

ArticleAmerican journal of human genetics2019

De Novo Heterozygous POLR2A Variants Cause a Neurodevelopmental Syndrome with Profound Infantile-Onset Hypotonia.

Hanneke A Haijes, Maria J E Koster, Holger Rehmann, Dong Li, Hakon Hakonarson, Gerarda Cappuccio, Miroslava Hancarova, Daphne Lehalle, Willie Reardon, G Bradley Schaefer and 34 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 72 citations in OpenAlex.

  1. Review
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  9. Further delineation of the SCAF4-associated neurodevelopmental disorder.European journal of human genetics : EJHG · 2025
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  10. Review
  11. Strabismus in Genetic Syndromes: A Review.Clinical & experimental ophthalmology · 2025
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  18. RNA Pol II Assembly Affects ncRNA Expression.International journal of molecular sciences · 2023
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

44 authors at 20 institutions in 11 countries.

Hanneke A HaijesDepartment of Pediatrics, Wilhelmina Children's Hospital, University Medical Center Utrecht, Utrecht University, 3584 EA Utrecht, the Netherlands; Department of Biomedical Genetics, Wilhelmina Children's Hospital, University Medical Center Utrecht, Utrecht University, 3584 EA Utrecht, the Netherlands; German Cancer Consortium (DKTK) standort Freiburg and German Cancer Research Center (DKFZ), 79106 Heidelberg, Germany.
Maria J E KosterRegenerative Medicine Center and Center for Molecular Medicine, University Medical Center Utrecht, Utrecht University, 3584 CT Utrecht, the Netherlands; German Cancer Consortium (DKTK) standort Freiburg and German Cancer Research Center (DKFZ), 79106 Heidelberg, Germany.
Holger RehmannExpertise Center for Structural Biology, University Medical Center Utrecht, Utrecht University, 3584 CT Utrecht, the Netherlands; Molecular Cancer Research, Center for Molecular Medicine, University Medical Center Utrecht, Utrecht University, Oncode Institute, 3584 CT Utrecht, the Netherlands.
Dong LiCenter for Applied Genomics, the Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
Hakon HakonarsonCenter for Applied Genomics, the Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA; Division of Human Genetics, the Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA; Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Gerarda CappuccioDepartment of Translational Medicine, Federico II University, 80126 Naples, Italy; Telethon Institute of Genetics and Medicine, Pozzuoli, 80126 Naples, Italy.
Miroslava HancarovaDepartment of Biology and Medical Genetics, Charles University Second Faculty of Medicine and University Hospital Motol, 150 06 Prague, Czech Republic.
Daphne LehalleDepartment of Genetics, Centre Hospitalier Universitaire de Dijon, 21000 Dijon, France.
Willie ReardonDepartment of Clinical and Medical Genetics, Our Lady's Hospital for Sick Children, D12 N512 Dublin, Ireland.
G Bradley SchaeferDepartment of Pediatrics, Section of Genetics and Metabolism, University of Arkansas for Medical Sciences, Little Rock, Arkansas, AR 72223, USA.
Anna LehmanDepartment of Medical Genetics, BC Children's Hospital Research Institute, University of British Columbia, BC V6H 3N1 Vancouver, Canada.
Ingrid M B H van de LaarDepartment of Clinical Genetics, Erasmus Medical University Center Rotterdam, 3000 CA Rotterdam, the Netherlands.
Coranne D TesselaarDepartment of Pediatrics, Amphia Hospital Breda, 4818 CK Breda, the Netherlands.
Clesson TurnerDepartment of Clinical Genetics and Pediatrics, Walter Reed National Military Medical Center, Bethesda, Maryland, MD 20814, USA.
Alice GoldenbergDepartment of Genetics, Rouen University Hospital, Centre de Référence Anomalies du Développement, Normandy Centre for Genomic and Personalized Medicine, 76000 Rouen, France.
Sophie PatrierDepartment of Pathology, Rouen University Hospital, Centre de Référence Anomalies du Développement, 76000 Rouen, France.
Julien ThevenonDepartment of Genetics and Reproduction, Centre Hospitalier Universitaire de Grenoble, 38700 Grenoble, France.
Michele PinelliDepartment of Translational Medicine, Federico II University, 80126 Naples, Italy; Telethon Institute of Genetics and Medicine, Pozzuoli, 80126 Naples, Italy.
Nicola Brunetti-PierriDepartment of Translational Medicine, Federico II University, 80126 Naples, Italy; Telethon Institute of Genetics and Medicine, Pozzuoli, 80126 Naples, Italy.
Darina PrchalováDepartment of Biology and Medical Genetics, Charles University Second Faculty of Medicine and University Hospital Motol, 150 06 Prague, Czech Republic.
Markéta HavlovicováDepartment of Biology and Medical Genetics, Charles University Second Faculty of Medicine and University Hospital Motol, 150 06 Prague, Czech Republic.
Markéta VlckovaDepartment of Biology and Medical Genetics, Charles University Second Faculty of Medicine and University Hospital Motol, 150 06 Prague, Czech Republic.
Zdeněk SedláčekDepartment of Biology and Medical Genetics, Charles University Second Faculty of Medicine and University Hospital Motol, 150 06 Prague, Czech Republic.
Elena LopezDepartment of Medical Genetics, BC Children's Hospital Research Institute, University of British Columbia, BC V6H 3N1 Vancouver, Canada.
Vassilis RagoussisNational Institute for Health Research Oxford Biomedical Research Centre, Wellcome Centre for Human Genetics, University of Oxford, OX3 7BN Oxford, UK.
Alistair T PagnamentaNational Institute for Health Research Oxford Biomedical Research Centre, Wellcome Centre for Human Genetics, University of Oxford, OX3 7BN Oxford, UK.
Usha KiniDepartment of Genomic Medicine, Oxford Centre for Genomic Medicine, Oxford University Hospitals National Health Service Foundation Trust, OX3 7LE Oxford, UK.
Harmjan R VosMolecular Cancer Research, Center for Molecular Medicine, University Medical Center Utrecht, Utrecht University, Oncode Institute, 3584 CT Utrecht, the Netherlands.
Robert M van EsMolecular Cancer Research, Center for Molecular Medicine, University Medical Center Utrecht, Utrecht University, Oncode Institute, 3584 CT Utrecht, the Netherlands.
Richard F M A van SchaikMolecular Cancer Research, Center for Molecular Medicine, University Medical Center Utrecht, Utrecht University, Oncode Institute, 3584 CT Utrecht, the Netherlands.
Ton A J van EssenDepartment of Clinical Genetics, University Medical Center Groningen, 9713 GZ Groningen, the Netherlands.
Maria KibaekH.C. Andersen Children Hospital, Odense University Hospital, 5000 Odense, Denmark.
Jenny C TaylorNational Institute for Health Research Oxford Biomedical Research Centre, Wellcome Centre for Human Genetics, University of Oxford, OX3 7BN Oxford, UK.
Jennifer SullivanDepartment of Pediatrics, Duke University School of Medicine, Durham, North Carolina, NC 27710, USA.
Vandana ShashiDepartment of Pediatrics, Duke University School of Medicine, Durham, North Carolina, NC 27710, USA.
Slave PetrovskiDepartment of Pediatrics, Duke University School of Medicine, Durham, North Carolina, NC 27710, USA; AstraZeneca Centre for Genomics Research, Precision Medicine and Genomics, IMED Biotech Unit, AstraZeneca, CB4 0WG Cambridge, United Kingdom; Department of Medicine, the University of Melbourne, VIC 3010 Melbourne, Australia.
Christina FagerbergDepartment of Clinical Genetics, Odense University Hospital, 5000 Odense, Denmark.
Donna M MartinDepartments of Pediatrics and Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan, MI 48109, USA.
Koen L I van GassenDepartment of Biomedical Genetics, Wilhelmina Children's Hospital, University Medical Center Utrecht, Utrecht University, 3584 EA Utrecht, the Netherlands.
Rolph PfundtDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center Nijmegen, 6525 HR Nijmegen, the Netherlands.
Marni J FalkDivision of Human Genetics, the Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA; Mitochondrial Medicine Frontier Program, Division of Human Genetics, the Children's Hospital of Philadelphia, PA 19104, Philadelphia, USA.
Elizabeth M McCormickMitochondrial Medicine Frontier Program, Division of Human Genetics, the Children's Hospital of Philadelphia, PA 19104, Philadelphia, USA.
H T Marc TimmersRegenerative Medicine Center and Center for Molecular Medicine, University Medical Center Utrecht, Utrecht University, 3584 CT Utrecht, the Netherlands; Department of Urology, University Medical Center Freiburg, University of Freiburg, 79110 Freiburg, Germany.
Peter M van HasseltDepartment of Pediatrics, Wilhelmina Children's Hospital, University Medical Center Utrecht, Utrecht University, 3584 EA Utrecht, the Netherlands. Electronic address: p.vanhasselt@umcutrecht.nl.
Utrecht University · NLCharles University · CZChildren's Hospital of Philadelphia · USCentre for Human Genetics · GBFederico II University Hospital · ITDuke University · USGerman Cancer Research Center · DEOdense University Hospital · DKUniversité de Rouen Normandie · FRUniversity of British Columbia · CAAmphia Ziekenhuis · NLAstraZeneca (United Kingdom) · GBCentre Hospitalier Universitaire de Grenoble · FRChildren's Health Ireland at Crumlin · IECHU Dijon Bourgogne · FRErasmus MC · NLNational Health Service · GBRadboud University Nijmegen · NLUniversity Medical Center Groningen · NLUniversity of Arkansas for Medical Sciences · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The RNA polymerase II complex (pol II) is responsible for transcription of all ∼21,000 human protein-encoding genes. Here, we describe sixteen individuals harboring de novo heterozygous variants in POLR2A, encoding RPB1, the largest subunit of pol II. An iterative approach combining structural evaluation and mass spectrometry analyses, the use of S. cerevisiae as a model system, and the assessment of cell viability in HeLa cells allowed us to classify eleven variants as probably disease-causing and four variants as possibly disease-causing. The significance of one variant remains unresolved. By quantification of phenotypic severity, we could distinguish mild and severe phenotypic consequences of the disease-causing variants. Missense variants expected to exert only mild structural effects led to a malfunctioning pol II enzyme, thereby inducing a dominant-negative effect on gene transcription. Intriguingly, individuals carrying these variants presented with a severe phenotype dominated by profound infantile-onset hypotonia and developmental delay. Conversely, individuals carrying variants expected to result in complete loss of function, thus reduced levels of functional pol II from the normal allele, exhibited the mildest phenotypes. We conclude that subtle variants that are central in functionally important domains of POLR2A cause a neurodevelopmental syndrome characterized by profound infantile-onset hypotonia and developmental delay through a dominant-negative effect on pol-II-mediated transcription of DNA.

Indexed as

MutationAdolescentAge of OnsetChildChild, PreschoolDNA-Directed RNA PolymerasesFemaleHeLa CellsHeterozygoteHumansMaleMuscle HypotoniaNeurodevelopmental DisordersPhenotypeSaccharomyces cerevisiaeDNA-Directed RNA PolymerasesPOLR2A RNA polymerase, humande novo variantsdesert regionsdesert Z scoredominant-negative effecthaplo-insufficiencyinfantile-onset hypotonianeurodevelopmental syndromePOLR2ARNA polymerase II complexRPB1

Identifiers

PMID31353023
PMCPMC6699192
OpenAlexW2963172142

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.