Evidence map›Paper›PMID 31351040›Full record

ArticleDevelopmental biology2019

Molecular patterning of the embryonic cranial mesenchyme revealed by genome-wide transcriptional profiling.

Krishnakali Dasgupta, Jong Uk Chung, Kesava Asam, Juhee Jeong

Open access · greenAbstract read
In one paragraph

Article in Developmental biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 27 citations in OpenAlex.

  1. Pooled it
  2. Expanding the phenotypic spectrum associated with ZIC1 variants: A neurodevelopmental disorder with and without craniosynostosis.Genetics in medicine : official journal of the American College of Medical Genetics · 2026
    Article
  3. Article
  4. A spatially organizedScience advances · 2025
    Article
  5. Article
  6. Article
  7. Review
  8. Stuck on you: Meninges cellular crosstalk in development.Current opinion in neurobiology · 2023
    Review
  9. Review
  10. Lineage-specific mutation ofFrontiers in physiology · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Knockout of the gene encoding the extracellular matrix protein SNED1 results in early neonatal lethality and craniofacial malformations.Developmental dynamics : an official publication of the American Association of Anatomists · 2021
    Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Where Did the Dura Mater Come from?Neurointervention · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Krishnakali DasguptaDepartment of Basic Science and Craniofacial Biology, New York University College of Dentistry, New York, NY, 10010, USA.
Jong Uk ChungDepartment of Basic Science and Craniofacial Biology, New York University College of Dentistry, New York, NY, 10010, USA.
Kesava AsamDepartment of Basic Science and Craniofacial Biology, New York University College of Dentistry, New York, NY, 10010, USA.
Juhee JeongDepartment of Basic Science and Craniofacial Biology, New York University College of Dentistry, New York, NY, 10010, USA. Electronic address: jj78@nyu.edu.
New York University · US

Funding

Genetic regulation of embryonic head mesenchyme patterningR01DE026798 · NIDCR · NEW YORK UNIVERSITY · PI JEONG, JUHEE · 2017 to 2021
$2.1M
NIDCR NIH HHS R01 DE026798
6 · The paper itself

Abstract

In the head of an embryo, a layer of mesenchyme surrounds the brain underneath the surface ectoderm. This cranial mesenchyme gives rise to the meninges, the calvaria (top part of the skull), and the dermis of the scalp. Abnormal development of these structures, especially the meninges and the calvaria, is linked to significant congenital defects in humans. It has been known that different areas of the cranial mesenchyme have different fates. For example, the calvarial bone develops from the cranial mesenchyme on the baso-lateral side of the head just above the eye (supraorbital mesenchyme, SOM), but not from the mesenchyme apical to SOM (early migrating mesenchyme, EMM). However, the molecular basis of this difference is not fully understood. To answer this question, we compared the transcriptomes of EMM and SOM using high-throughput sequencing (RNA-seq). This experiment identified a large number of genes that were differentially expressed in EMM and SOM, and gene ontology analyses found very different terms enriched in each region. We verified the expression of about 40 genes in the head by RNA in situ hybridization, and the expression patterns were annotated to make a map of molecular markers for 6 subdivisions of the cranial mesenchyme. Our data also provided insights into potential novel regulators of cranial mesenchyme development, including several axon guidance pathways, lectin complement pathway, cyclic-adenosine monophosphate (cAMP) signaling pathway, and ZIC family transcription factors. Together, information in this paper will serve as a unique resource to guide future research on cranial mesenchyme development.

Indexed as

AnimalsAxon GuidanceBody PatterningCell Adhesion MoleculesFemaleGene Expression Regulation, DevelopmentalImmunity, InnateIn Situ HybridizationMaleMesodermMiceMice, Inbred C57BLNeoplasmsRNA-SeqSignal TransductionSkullCell Adhesion MoleculesTranscription FactorsCalvariaCranial mesenchymeCraniofacial developmentMeningesMouseTranscriptional profiling

Identifiers

PMID31351040
PMCPMC6842427
OpenAlexW2963100101

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.