ArticleBioinformatics (Oxford, England)2019
The nPYc-Toolbox, a Python module for the pre-processing, quality-control and analysis of metabolic profiling datasets.
Article in Bioinformatics (Oxford, England), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed.
- Inulin-type fructans and 2'fucosyllactose alter both microbial composition and appear to alleviate stress-induced mood state in a working population compared to placebo (maltodextrin): the EFFICAD Trial, a randomized, controlled trial.The American journal of clinical nutrition · 2023Trial
- Lipid Class Prediction from MS1 Data using Gaussian Graphical Models.Analytical chemistry · 2026Article
- A Universal Framework for Blood Ionome Extraction and Intelligent Quality Control inAnalytical chemistry · 2026Article
- Itacitinib in advanced hepatocellular cancer following first line therapy.NPJ precision oncology · 2026Article
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- Toward a Cannabis Terroir: Untargeted Metabolomic Profiling of Authentic Samples Using Gas Chromatography-High-Resolution Mass Spectrometry (GC-HRMS) and Liquid Chromatography-High-Resolution Tandem Mass Spectrometry (LC-HRMS/MS).Drug testing and analysis · 2025Article
- Predicting potato plant vigor from the seed tuber properties.Scientific reports · 2025Article
- MAMSI: Integration of Multiassay Liquid Chromatography-Mass Spectrometry Metabolomics Data Using Multiview Machine Learning.Analytical chemistry · 2025Article
- Open Label Vancomycin in Primary Sclerosing Cholangitis-Inflammatory Bowel Disease: Improved Colonic Disease Activity and Associations With Changes in Host-Microbiome-Metabolomic Signatures.Journal of Crohn's & colitis · 2025Observational
- Assessing the influence of sleep and sampling time on metabolites in oral fluid: implications for metabolomics studies.Metabolomics : Official journal of the Metabolomic Society · 2024Article
- Adipose tissue-derived metabolite risk scores and risk for type 2 diabetes in South Asians.International journal of obesity (2005) · 2024Article
- Demonstrating the reliability of in vivo metabolomics based chemical grouping: towards best practice.Archives of toxicology · 2024Article
- Article
- Fecal microbiota transplantation plus anti-PD-1 immunotherapy in advanced melanoma: a phase I trial.Nature medicine · 2023Article
- Pathobionts in the tumour microbiota predict survival following resection for colorectal cancer.Microbiome · 2023Observational
- Discriminatory Changes in Circulating Metabolites as a Predictor of Hepatocellular Cancer in Patients with Metabolic (Dysfunction) Associated Fatty Liver Disease.Liver cancer · 2023Article
- Diet Patterns Are Associated with Circulating Metabolites and Lipid Profiles of South Asians in the United States.The Journal of nutrition · 2022Article
- Metabolome-wide association study onProceedings of the National Academy of Sciences of the United States of America · 2022Article
- Metabolomic profiling in small vessel disease identifies multiple associations with disease severity.Brain : a journal of neurology · 2022Article
- Associations of NAFLD with circulating ceramides and impaired glycemia.Diabetes research and clinical practice · 2022Article
Corrections and comments
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Authors and funding
10 authors.
Funding
Abstract
summaryAs large-scale metabolic phenotyping studies become increasingly common, the need for systemic methods for pre-processing and quality control (QC) of analytical data prior to statistical analysis has become increasingly important, both within a study, and to allow meaningful inter-study comparisons. The nPYc-Toolbox provides software for the import, pre-processing, QC and visualization of metabolic phenotyping datasets, either interactively, or in automated pipelines. AVAILABILITY AND IMPLEMENTATION: The nPYc-Toolbox is implemented in Python, and is freely available from the Python package index https://pypi.org/project/nPYc/, source is available at https://github.com/phenomecentre/nPYc-Toolbox. Full documentation can be found at http://npyc-toolbox.readthedocs.io/ and exemplar datasets and tutorials at https://github.com/phenomecentre/nPYc-toolbox-tutorials.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.