Evidence map›Paper›PMID 31350437›Full record

ArticleScientific reports2019

Genetic comparison of sickle cell anaemia cohorts from Brazil and the United States reveals high levels of divergence.

Pedro R S Cruz, Galina Ananina, Vera Lucia Gil-da-Silva-Lopes, Milena Simioni, Farid Menaa, Marcos A C Bezerra, Igor F Domingos, Aderson S Araújo, Renata Pellegrino, Hakon Hakonarson and 2 more

Abstract readComparative Study
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Pulmonary circulation · 2023
    Article
  5. Review
  6. Topical Vapocoolant-Associated Vaso-occlusive Event in a 10-year-old with Sickle Cell Disease.Pain management nursing : official journal of the American Society of Pain Management Nurses · 2021
    Article
  7. Genotypic Diversity among Angolan Children with Sickle Cell Anemia.International journal of environmental research and public health · 2021
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Pedro R S CruzLaboratory of Human Genetics, Centre for Molecular Biology and Genetic Engineering (CBMEG), University of Campinas - UNICAMP, Campinas, SP, Brazil.ORCID http://orcid.org/0000-0002-0133-8439
Galina AnaninaLaboratory of Human Genetics, Centre for Molecular Biology and Genetic Engineering (CBMEG), University of Campinas - UNICAMP, Campinas, SP, Brazil.
Vera Lucia Gil-da-Silva-LopesDepartment of Medical Genetics and Genomic Medicine, Faculty of Medical Sciences, University of Campinas - UNICAMP, Campinas, SP, Brazil.ORCID http://orcid.org/0000-0003-1288-0554
Milena SimioniDepartment of Medical Genetics and Genomic Medicine, Faculty of Medical Sciences, University of Campinas - UNICAMP, Campinas, SP, Brazil.
Farid MenaaLaboratory of Human Genetics, Centre for Molecular Biology and Genetic Engineering (CBMEG), University of Campinas - UNICAMP, Campinas, SP, Brazil.
Marcos A C BezerraGenetics Postgraduate Program, Federal University of Pernambuco, Recife, PE, Brazil.
Igor F DomingosGenetics Postgraduate Program, Federal University of Pernambuco, Recife, PE, Brazil.
Aderson S AraújoHaematology and Haemotherapy Foundation of Pernambuco - HEMOPE, Recife, PE, Brazil.
Renata PellegrinoCenter for Applied Genomics, Abramson Research Center, The Children's Hospital of Philadelphia, Philadelphia, USA.
Hakon HakonarsonCenter for Applied Genomics, Abramson Research Center, The Children's Hospital of Philadelphia, Philadelphia, USA.ORCID http://orcid.org/0000-0003-2814-7461
Fernando F CostaHaematology and Haemotherapy Centre, University of Campinas - UNICAMP, Campinas, São Paulo, Brazil.
Mônica Barbosa de MeloLaboratory of Human Genetics, Centre for Molecular Biology and Genetic Engineering (CBMEG), University of Campinas - UNICAMP, Campinas, SP, Brazil. melomb@uol.com.br.ORCID http://orcid.org/0000-0002-1801-5441

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genetic analysis of admixed populations raises special concerns with regard to study design and data processing, particularly to avoid population stratification biases. The point mutation responsible for sickle cell anaemia codes for a variant hemoglobin, sickle hemoglobin or HbS, whose presence drives the pathophysiology of disease. Here we propose to explore ancestry and population structure in a genome-wide study with particular emphasis on chromosome 11 in two SCA admixed cohorts obtained from urban populations of Brazil (Pernambuco and São Paulo) and the United States (Pennsylvania). Ancestry inference showed different proportions of European, African and American backgrounds in the composition of our samples. Brazilians were more admixed, had a lower African background (43% vs. 78% on the genomic level and 44% vs. 76% on chromosome 11) and presented a signature of positive selection and Iberian introgression in the HbS region, driving a high differentiation of this locus between the two cohorts. The genetic structures of the SCA cohorts from Brazil and US differ considerably on the genome-wide, chromosome 11 and HbS mutation locus levels.

Indexed as

GenotypePopulation GroupsAnemia, Sickle CellBrazilChromosomes, Human, Pair 11Cohort StudiesGene FrequencyGenetics, PopulationGenomeGenome-Wide Association StudyHaplotypesHemoglobin, SickleHumansRacial GroupsUnited StatesHemoglobin, Sickle

Identifiers

PMID31350437
PMCPMC6659681

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.