Evidence map›Paper›PMID 31350272›Full record

ArticleDisease models & mechanisms2019

Genome-wide analysis of androgen receptor binding and transcriptomic analysis in mesenchymal subsets during prostate development.

Claire Nash, Nadia Boufaied, Dunarel Badescu, Yu Chang Wang, Miltiadis Paliouras, Mark Trifiro, Ioannis Ragoussis, Axel A Thomson

Open access · goldAbstract read
In one paragraph

Article in Disease models & mechanisms, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Prostate organogenesis.Development (Cambridge, England) · 2022
    Article
  7. Review
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Claire NashDepartment of Surgery, Division of Urology, McGill University and the Cancer Research Program of the Research Institute of McGill University Health Centre, Montreal, Quebec, Canada H4A 3J1.
Nadia BoufaiedDepartment of Surgery, Division of Urology, McGill University and the Cancer Research Program of the Research Institute of McGill University Health Centre, Montreal, Quebec, Canada H4A 3J1.
Dunarel BadescuMcGill University and Genome Quebec Innovation Center, Montreal, Quebec, Canada H3A 0G1.
Yu Chang WangMcGill University and Genome Quebec Innovation Center, Montreal, Quebec, Canada H3A 0G1.
Miltiadis PaliourasDivision of Endocrinology, Department of Medicine, Sir Mortimer B. Davis-Jewish General Hospital, 5750 Côte-des-Neiges Rd, Montreal, QC, Canada H3S 1Y9.
Mark TrifiroDivision of Endocrinology, Department of Medicine, Sir Mortimer B. Davis-Jewish General Hospital, 5750 Côte-des-Neiges Rd, Montreal, QC, Canada H3S 1Y9.
Ioannis RagoussisMcGill University and Genome Quebec Innovation Center, Montreal, Quebec, Canada H3A 0G1.
Axel A ThomsonDepartment of Surgery, Division of Urology, McGill University and the Cancer Research Program of the Research Institute of McGill University Health Centre, Montreal, Quebec, Canada H4A 3J1 axelthomson@gmail.com.ORCID 0000-0001-7524-2344
McGill University and Génome Québec Innovation Centre · CAMcGill University Health Centre · CAJewish General Hospital · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prostate development is controlled by androgens, the eandrogen receptor (AR) and mesenchymal-epithelial signalling. We used chromatin immunoprecipitation sequencing (ChIP-seq) to define AR genomic binding in the male and female mesenchyme. Tissue- and single-cell-based transcriptional profiling was used to define mesenchymal AR target genes. We observed significant AR genomic binding in females and a strong enrichment at proximal promoters in both sexes. In males, there was greater AR binding to introns and intergenic regions as well as to classical AR binding motifs. In females, there was increased proximal promoter binding and involvement of cofactors. Comparison of AR-bound genes with transcriptomic data enabled the identification of novel sexually dimorphic AR target genes. We validated the dimorphic expression of AR target genes using published datasets and confirmed regulation by androgens using

Indexed as

TranscriptomeAnimalsChromatin ImmunoprecipitationFemaleHumansMaleMesodermOrganogenesisPromoter Regions, GeneticProstateProtein BindingRatsReal-Time Polymerase Chain ReactionReceptors, AndrogenReceptors, AndrogenAndrogen receptorChIP-seqMesenchymeProstate developmentRNA-seqSingle-cell RNA-seq

Identifiers

PMID31350272
PMCPMC6679388
OpenAlexW2963560224

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.