Evidence map›Paper›PMID 31349814›Full record

ArticleBMC microbiology2019

YpeB dimerization may be required to stabilize SleB for effective germination of Bacillus anthracis spores.

Cameron V Sayer, David L Popham

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Structural and functional analysis ofMicrobiology (Reading, England) · 2025
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Insights into the Structure and Protein Composition ofInternational journal of molecular sciences · 2022
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 2 countries.

Cameron V SayerDepartment of Biological Sciences, Virginia Tech, 926 West Campus Drive, Blacksburg, VA, 24061, USA.
David L PophamDepartment of Biological Sciences, Virginia Tech, 926 West Campus Drive, Blacksburg, VA, 24061, USA. dpopham@vt.edu.
Université Bourgogne Franche-Comté · FR

Funding

Stabilization and regulation of a Bacillus anthracis spore lytic enzymeR21AI109111 · NIAID · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI POPHAM, DAVID L · 2014 to 2015
$413k
Proteomic Analyses of Clostridium difficile Spore Germination ApparatusR21AI088298 · NIAID · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI HELM, RICHARD, JENSEN, RODERICK V · 2010 to 2011
$410k
NIAID NIH HHS R21 AI109111
6 · The paper itself

Abstract

backgroundBacillus cells faced with unfavorable environmental conditions undergo an asymmetric division process ultimately leading to the formation of the bacterial spore. In some instances the spore serves as an infectious agent; such is the case with the spore of Bacillus anthracis and the disease anthrax. Spores are resistant to a variety of environment conditions including traditional decontamination techniques due to the formation of specialized cellular structures. One such structure, the spore cortex, is a thick layer of modified peptidoglycan that contributes to spore dormancy through maintenance of the dehydrated state of the spore core. During spore germination, degradation of the cortex is required to facilitate complete hydration of the core and a return to vegetative growth. Degradation of the cortex is accomplished through the action of germination-specific lytic enzymes. One of these enzymes, SleB, has been previously shown to require the presence of the YpeB protein for its stable incorporation and subsequent function in spores of B. anthracis. The focus of the present study is to identify protein interactions of YpeB through in vivo chemical cross-linking and two-hybrid analysis.

resultsConserved residues within YpeB PepSY domains were altered to facilitate implementation of a site-specific chemical cross-linker, 4-Azidophenacyl bromide. Analyses of crosslinked-spore extracts suggests that YpeB exists as a dimer or larger multimer within the spore, potentially mediated through interactions of the C-terminal domains. Spores expressing stable truncated forms of YpeB were crosslinked and corresponding truncated dimers were detected. Further characterization of individual YpeB domains using bacterial two-hybrid analysis indicated a possible role for both N-and C-terminal domains in YpeB oligomerization.

conclusionsThe YpeB protein likely exists as dimer or higher-order multimer in the dormant spore. Both the N- and C-terminal YpeB domains contribute to multimerization. SleB likely also exists as an oligomer, and SleB and YpeB may be found together within a protein complex. Disassembly of this complex during spore germination likely allows SleB to become active in spore cortex degradation. Further study of this protein complex may contribute to the development of methods to inhibit or stimulate germination, allowing more effective spore decontamination.

Indexed as

Bacillus anthracisAmidohydrolasesBacterial ProteinsCell WallDimerizationGenes, BacterialMutagenesis, Site-DirectedPeptidoglycanSpores, BacterialAmidohydrolasesBacterial ProteinsPeptidoglycanSleB protein, BacillusBacillusCortexEndosporeGerminationSpore

Identifiers

PMID31349814
PMCPMC6660665
OpenAlexW2965433603

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.