Evidence map›Paper›PMID 31349783›Full record

ArticleBMC genomics2019

Genome-wide analysis of the NF-Y gene family in peach (Prunus persica L.).

Miao Li, Guixiang Li, Wei Liu, Xiaomin Dong, Anning Zhang

Abstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Comprehensive Analysis ofPlants (Basel, Switzerland) · 2025
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  9. Genomic identification of theMolecular breeding : new strategies in plant improvement · 2025
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  10. Review
  11. Article
  12. Article
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  14. Genome-Wide Analysis ofInternational journal of molecular sciences · 2024
    Article
  15. Article
  16. Article
  17. Article
  18. Genome-Wide Characterization ofInternational journal of molecular sciences · 2022
    Article
  19. Genome-Wide Identification and Characterization of theInternational journal of molecular sciences · 2022
    Article
  20. CarrotOmics: a genetics and comparative genomics database for carrot (Daucus carota).Database : the journal of biological databases and curation · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Miao LiShandong Institute of Pomology, Taian, Shandong, China.
Guixiang LiShandong Institute of Pomology, Taian, Shandong, China.
Wei LiuShandong Institute of Pomology, Taian, Shandong, China.
Xiaomin DongShandong Institute of Pomology, Taian, Shandong, China.
Anning ZhangShandong Institute of Pomology, Taian, Shandong, China. zan_hope@163.com.

Funding

Agriculture Research System of China (CN) CARS-30-Z-08
6 · The paper itself

Abstract

backgroundNuclear Factor Y (NF-Y) is a heterotrimeric complex composed of three unique subunits: NF-YA, NF-YB, and NF-YC. The NF-Y transcription factor complex binds to the CCAAT box of eukaryotic promoters, playing a vital role in various biological processes in plants. However, the NF-Y gene family has not yet been reported from the peach genome. The current study identified and classified candidate peach NF-Y genes for further functional analysis of this family.

resultsThe current study identified 24 Nuclear Factor Y (NF-Y) transcription factor subunits (6 NF-YA, 12 NF-YB, and 6 NF-YC subunits) in peach. These NF-Y subunits were described with respect to basic physicochemical characteristics, chromosome locations, gene structures, and conserved domains. Based on an analysis of the phylogenetic relationships among peach NF-Ys, six pairs of paralogous NF-Ys were detected. The expansion of the peach NF-Y family occurred by segmental and tandem duplication. Phylogenetic gene synteny of NF-Y proteins was observed between peach and Arabidopsis, and five pairs of paralogous NF-Y proteins from peach and Arabidopsis were identified. Twenty-four peach NF-Ys displayed a diversity of tissue expression patterns. In addition, drought-responsive cis-elements were observed in peach NF-Y promoters, and 9 peach NF-Y genes were shown to distinctly increase their transcript abundances under drought stress.

conclusionsThis study identified 24 NF-Y genes in the peach genome and analysed their properties at different levels, providing a foundation for researchers to understand this gene family in peach. The up-regulation of 9 NF-Y genes under drought stress indicates that they can serve as candidate functional genes to further study drought resistance in peach.

Indexed as

Multigene FamilyAmino Acid SequenceArabidopsisCCAAT-Binding FactorDroughtsGene DuplicationGenome, PlantPhylogenyPlant ProteinsPrunus persicaStress, PhysiologicalSyntenyCCAAT-Binding Factornuclear factor YPlant ProteinsDrought stressGenomicsNuclear Factor YPeachTranscription factors

Identifiers

PMID31349783
PMCPMC6660701

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.