Evidence map›Paper›PMID 31348889›Full record

ArticleCell2019

Human Artificial Chromosomes that Bypass Centromeric DNA.

Glennis A Logsdon, Craig W Gambogi, Mikhail A Liskovykh, Evelyne J Barrey, Vladimir Larionov, Karen H Miga, Patrick Heun, Ben E Black

Open access · hybridAbstract read
In one paragraph

Article in Cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
20.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 106 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Rapid assembly of functional modules for generating human artificial chromosome constructs compatible with epigenetic centromere seeding.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Article
  7. Article
  8. The dynamic centromere.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Review
  9. Article
  10. Centromere regulation in the germline and early embryo.Current opinion in genetics & development · 2025
    Review
  11. CENP-A and centromere evolution in equids.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Review
  12. Article
  13. The design and engineering of synthetic genomes.Nature reviews. Genetics · 2025
    Review
  14. Article
  15. Review
  16. Review
  17. Article
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  19. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Glennis A LogsdonDepartment of Biochemistry and Biophysics, Graduate Program in Biochemistry and Molecular Biophysics, and Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Craig W GambogiDepartment of Biochemistry and Biophysics, Graduate Program in Biochemistry and Molecular Biophysics, and Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Mikhail A LiskovykhDevelopmental Therapeutics Branch, National Cancer Institute, Bethesda, MD 20892, USA.
Evelyne J BarreyWellcome Trust Centre for Cell Biology, Institute of Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK.
Vladimir LarionovDevelopmental Therapeutics Branch, National Cancer Institute, Bethesda, MD 20892, USA.
Karen H MigaCenter for Biomolecular Science and Engineering, University of California, Santa Cruz, Santa Cruz, CA 95064, USA.
Patrick HeunWellcome Trust Centre for Cell Biology, Institute of Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK.
Ben E BlackDepartment of Biochemistry and Biophysics, Graduate Program in Biochemistry and Molecular Biophysics, and Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address: blackbe@pennmedicine.upenn.edu.
University of Pennsylvania · USNational Cancer Institute · USUniversity of California, Santa Cruz · USUniversity of Edinburgh · GBWellcome Centre for Cell Biology · GB

Funding

TRAINING PROGRAM IN CELL AND MOLECULAR BIOLOGYT32GM007229 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BARTOLOMEI, MARISA S. · 1985 to 2023
$14.0M
Centromere identity, strength, and regulationR35GM130302 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Ben E. Black · 2019 to 2026
$4.3M
NIGMS NIH HHS R35 GM130302NIGMS NIH HHS T32 GM007229Wellcome Trust 092076Wellcome Trust 103897/Z/14Wellcome Trust 203149
6 · The paper itself

Abstract

Recent breakthroughs with synthetic budding yeast chromosomes expedite the creation of synthetic mammalian chromosomes and genomes. Mammals, unlike budding yeast, depend on the histone H3 variant, CENP-A, to epigenetically specify the location of the centromere-the locus essential for chromosome segregation. Prior human artificial chromosomes (HACs) required large arrays of centromeric α-satellite repeats harboring binding sites for the DNA sequence-specific binding protein, CENP-B. We report the development of a type of HAC that functions independently of these constraints. Formed by an initial CENP-A nucleosome seeding strategy, a construct lacking repetitive centromeric DNA formed several self-sufficient HACs that showed no uptake of genomic DNA. In contrast to traditional α-satellite HAC formation, the non-repetitive construct can form functional HACs without CENP-B or initial CENP-A nucleosome seeding, revealing distinct paths to centromere formation for different DNA sequence types. Our developments streamline the construction and characterization of HACs to facilitate mammalian synthetic genome efforts.

Indexed as

Binding SitesCell Line, TumorCentromereCentromere Protein ACentromere Protein BChromosomes, Artificial, HumanDNA, SatelliteEpigenesis, GeneticHumansNucleosomesPlasmidsCentromere Protein ACentromere Protein BDNA, SatelliteNucleosomescentromerechromatinepigeneticsHAChistonehuman artificial chromosomekinetochoremitosisnucleosomesynthetic chromosome

Identifiers

PMID31348889
PMCPMC6657561
OpenAlexW2963890628

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.