Evidence map›Paper›PMID 31347998›Full record

ArticleMicrobial genomics2019

The speciation and hybridization history of the genus

Alexis Criscuolo, Sylvie Issenhuth-Jeanjean, Xavier Didelot, Kaisa Thorell, James Hale, Julian Parkhill, Nicholas R Thomson, François-Xavier Weill, Daniel Falush, Sylvain Brisse

Abstract read
In one paragraph

Article in Microbial genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Polyphyly in widespreadFrontiers in public health · 2022
    Article
  9. Article
  10. Article
  11. The Changing Face of the FamilyClinical microbiology reviews · 2021
    Review
  12. Phylogeny ofMicrobial genomics · 2021
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Alexis CriscuoloHub de Bioinformatique et Biostatistique - Département Biologie Computationnelle, Institut Pasteur, USR 3756 CNRS, Paris, France.
Sylvie Issenhuth-JeanjeanInstitut Pasteur, Unité des Bactéries Pathogènes Entériques, World Health Organization Collaborating Centre for Reference and Research on Salmonella, Paris, France.
Xavier DidelotSchool of Life Sciences and Department of Statistics, University of Warwick, Coventry, UK.
Kaisa ThorellDepartment of Microbiology and Immunology, University of Gothenburg, Gothenburg, Sweden.
James HaleEnvironmental Research Institute, University College Cork, Cork, Ireland.
Julian ParkhillWellcome Trust Sanger Institute, Hinxton, UK.
Nicholas R ThomsonWellcome Trust Sanger Institute, Hinxton, UK.
François-Xavier WeillInstitut Pasteur, Unité des Bactéries Pathogènes Entériques, World Health Organization Collaborating Centre for Reference and Research on Salmonella, Paris, France.
Daniel FalushThe Milner Centre for Evolution, University of Bath, Bath, UK.
Sylvain BrisseInstitut Pasteur, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France.

Funding

Medical Research Council MR/R015600/1
6 · The paper itself

Abstract

Bacteria and archaea make up most of natural diversity, but the mechanisms that underlie the origin and maintenance of prokaryotic species are poorly understood. We investigated the speciation history of the genus

Indexed as

Bacterial Typing TechniquesBiological EvolutionClassificationEvolution, MolecularGenetic SpeciationMultilocus Sequence TypingNucleic Acid HybridizationPhylogenySalmonellaSalmonella entericaevolutiongenomicshybridizationSalmonellaspeciationtaxonomy

Identifiers

PMID31347998
PMCPMC6755497

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.