Evidence map›Paper›PMID 31347271›Full record

ArticleEMBO reports2019

CDK12 controls G1/S progression by regulating RNAPII processivity at core DNA replication genes.

Anil Paul Chirackal Manavalan, Kveta Pilarova, Michael Kluge, Koen Bartholomeeusen, Michal Rajecky, Jan Oppelt, Prashant Khirsariya, Kamil Paruch, Lumir Krejci, Caroline C Friedel and 1 more

Open access · hybridAbstract read
In one paragraph

Article in EMBO reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 106 citations in OpenAlex.

  1. Trial
  2. Article
  3. Targeting CDKs in the RNAPII transcription cycle.Nature reviews. Drug discovery · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Dual Modes of Gene Regulation by CDK12.bioRxiv : the preprint server for biology · 2025
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Discovery ofJournal of medicinal chemistry · 2025
    Article
  17. Review
  18. Review
  19. Review
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Anil Paul Chirackal ManavalanCentral European Institute of Technology (CEITEC), Masaryk University, Brno, Czech Republic.ORCID 0000-0002-2113-0715
Kveta PilarovaCentral European Institute of Technology (CEITEC), Masaryk University, Brno, Czech Republic.
Michael KlugeInstitut für Informatik, Ludwig-Maximilians-Universität München, München, Germany.
Koen BartholomeeusenCentral European Institute of Technology (CEITEC), Masaryk University, Brno, Czech Republic.
Michal RajeckyCentral European Institute of Technology (CEITEC), Masaryk University, Brno, Czech Republic.
Jan OppeltCentral European Institute of Technology (CEITEC), Masaryk University, Brno, Czech Republic.ORCID 0000-0002-3076-4840
Prashant KhirsariyaDepartment of Chemistry, CZ Openscreen, Faculty of Science, Masaryk University, Brno, Czech Republic.
Kamil ParuchDepartment of Chemistry, CZ Openscreen, Faculty of Science, Masaryk University, Brno, Czech Republic.
Lumir KrejciCenter of Biomolecular and Cellular Engineering, International Clinical Research Center, St. Anne's University Hospital, Brno, Czech Republic.
Caroline C FriedelInstitut für Informatik, Ludwig-Maximilians-Universität München, München, Germany.
Dalibor BlazekCentral European Institute of Technology (CEITEC), Masaryk University, Brno, Czech Republic.ORCID 0000-0003-4662-9982
Central European Institute of Technology · CZMasaryk University · CZLudwig-Maximilians-Universität München · DE

Funding

CEITEC CZ.1.05/1.1.00/02.0068Czech Science Foundation 17-13692SCzech Science Foundation 17-17720SDeutsche Forschungsgemeinschaft CRC 1123 (Z2)Deutsche Forschungsgemeinschaft FR2938/7-1MEYS CR LQ1605MSCAfellow@MUNI CZ.02.2.69/0.0/0.0/17_050/0008496National Infrastructure for Chemical Biology LM2015063Projects of Large Research, Development, and Innovations Infrastructures CESNET LM2015042The Grant Agency of Masaryk University MUNI/E/0514/2019Wellcome TrustWellcome Trust Collaborative Grant 206292/E/17/Z
6 · The paper itself

Abstract

CDK12 is a kinase associated with elongating RNA polymerase II (RNAPII) and is frequently mutated in cancer. CDK12 depletion reduces the expression of homologous recombination (HR) DNA repair genes, but comprehensive insight into its target genes and cellular processes is lacking. We use a chemical genetic approach to inhibit analog-sensitive CDK12, and find that CDK12 kinase activity is required for transcription of core DNA replication genes and thus for G1/S progression. RNA-seq and ChIP-seq reveal that CDK12 inhibition triggers an RNAPII processivity defect characterized by a loss of mapped reads from 3'ends of predominantly long, poly(A)-signal-rich genes. CDK12 inhibition does not globally reduce levels of RNAPII-Ser2 phosphorylation. However, individual CDK12-dependent genes show a shift of P-Ser2 peaks into the gene body approximately to the positions where RNAPII occupancy and transcription were lost. Thus, CDK12 catalytic activity represents a novel link between regulation of transcription and cell cycle progression. We propose that DNA replication and HR DNA repair defects as a consequence of CDK12 inactivation underlie the genome instability phenotype observed in many cancers.

Indexed as

Cyclin-Dependent KinasesDNA RepairDNA ReplicationG1 Phase Cell Cycle CheckpointsHCT116 CellsHumansPhosphorylationRNA Polymerase IICDK12 protein, humanCyclin-Dependent KinasesRNA Polymerase IICDK12CTD Ser2 phosphorylationG1/Spremature termination and polyadenylationtandem duplications

Identifiers

PMID31347271
PMCPMC6727028
OpenAlexW2965004170

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.