Evidence map›Paper›PMID 31347257›Full record

ArticleEMBO reports2019

DDX3X and specific initiation factors modulate FMR1 repeat-associated non-AUG-initiated translation.

Alexander E Linsalata, Fang He, Ahmed M Malik, Mary Rebecca Glineburg, Katelyn M Green, Sam Natla, Brittany N Flores, Amy Krans, Hilary C Archbold, Stephen J Fedak and 2 more

Open access · hybridAbstract read
In one paragraph

Article in EMBO reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. RAN Translation-Coupled Decay of theInternational journal of molecular sciences · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Decoding Nucleotide Repeat Expansion Diseases: Novel Insights fromInternational journal of molecular sciences · 2024
    Review
  9. Article
  10. Article
  11. Article
  12. Stress granule formation helps to mitigate neurodegeneration.bioRxiv : the preprint server for biology · 2023
    Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Repeat-associated non-AUG translation induces cytoplasmic aggregation of CAG repeat-containing RNAs.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Alexander E LinsalataCellular and Molecular Biology Graduate Program, University of Michigan, Ann Arbor, MI, USA.
Fang HeDepartment of Neurology, University of Michigan, Ann Arbor, MI, USA.
Ahmed M MalikDepartment of Neurology, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0002-2625-7483
Mary Rebecca GlineburgDepartment of Neurology, University of Michigan, Ann Arbor, MI, USA.
Katelyn M GreenCellular and Molecular Biology Graduate Program, University of Michigan, Ann Arbor, MI, USA.
Sam NatlaDepartment of Neurology, University of Michigan, Ann Arbor, MI, USA.
Brittany N FloresCellular and Molecular Biology Graduate Program, University of Michigan, Ann Arbor, MI, USA.
Amy KransDepartment of Neurology, University of Michigan, Ann Arbor, MI, USA.
Hilary C ArchboldDepartment of Neurology, University of Michigan, Ann Arbor, MI, USA.
Stephen J FedakDepartment of Neurology, University of Michigan, Ann Arbor, MI, USA.
Sami J BarmadaDepartment of Neurology, University of Michigan, Ann Arbor, MI, USA.
Peter K ToddDepartment of Neurology, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0003-4781-6376
University of Michigan · USTexas A&M University – Kingsville · US

Funding

MICHIGAN MEDICAL SCIENTIST TRAINING PROGRAMT32GM007863 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI COLLINS, KATHLEEN L. · 1985 to 2024
$38.3M
CELLULAR AND MOLECULAR BIOLOGY AT MICHIGANT32GM007315 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PUTHENVEEDU, MANOJKUMAR A · 1985 to 2021
$12.8M
Michigan Alzheimer's Disease Core CenterP30AG053760 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ROBERTS, SCOTT · 2016 to 2020
$10.1M
TRAINING IN CLINICAL AND BASIC NEUROSCIENCET32NS007222 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Henry L Paulson · 1985 to 2026
$8.0M
Hexanucleotide repeat translation in ALS and Frontotemporal DementiaR01NS099280 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Peter K Todd · 2016 to 2026
$4.9M
CGG repeat associated translation in Fragile X-associated Tremor/Ataxia Syndrome-Diversity SupplementR01NS086810 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI TODD, PETER K · 2014 to 2024
$4.1M
RNA decay in amyotrophic lateral sclerosis and frontotemporal lobar degenerationR01NS097542 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BARMADA, SAMI · 2016 to 2025
$3.8M
Determining the role of RNA-based factors in RAN translation of C9ALS/FTD-associated GGGGCC repeatsF31NS100302 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GREEN, KATELYN MARIE · 2017 to 2019
$125k
Identification of Repeat-Associated, Non-ATG (RAN) translation modulators in neurodegenerative diseaseF30NS098571 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LINSALATA, ALEXANDER EDWARD · 2016 to 2017
$73k
BLRD VA I01 BX003231BLRD VA I21 BX001841HHS | NIH | National Institute of General Medical Sciences (NIGMS) T32GM007315HHS | NIH | National Institute of Neurological Disorders and Stroke (NINDS) 1P30AG053760HHS | NIH | National Institute of Neurological Disorders and Stroke (NINDS) F30NS098571HHS | NIH | National Institute of Neurological Disorders and Stroke (NINDS) F31NS100302HHS | NIH | National Institute of Neurological Disorders and Stroke (NINDS) R01NS086810HHS | NIH | National Institute of Neurological Disorders and Stroke (NINDS) R01NS097542HHS | NIH | National Institute of Neurological Disorders and Stroke (NINDS) R01NS099280HHS | NIH | National Institute of Neurological Disorders and Stroke (NINDS) T32NS007222Michigan Alzheimer's Disease Center and Protein Folding Disease InitiativeNIA NIH HHS P30 AG053760NIGMS NIH HHS T32 GM007315NIGMS NIH HHS T32 GM007863NINDS NIH HHS F30 NS098571NINDS NIH HHS F31 NS100302NINDS NIH HHS R01 NS086810NINDS NIH HHS R01 NS097542NINDS NIH HHS R01 NS099280NINDS NIH HHS T32 NS007222U.S. Department of Veterans Affairs (VA) 1I01BX003231U.S. Department of Veterans Affairs (VA) 1I21BX001841
6 · The paper itself

Abstract

A CGG trinucleotide repeat expansion in the 5' UTR of FMR1 causes the neurodegenerative disorder Fragile X-associated tremor/ataxia syndrome (FXTAS). This repeat supports a non-canonical mode of protein synthesis known as repeat-associated, non-AUG (RAN) translation. The mechanism underlying RAN translation at CGG repeats remains unclear. To identify modifiers of RAN translation and potential therapeutic targets, we performed a candidate-based screen of eukaryotic initiation factors and RNA helicases in cell-based assays and a Drosophila melanogaster model of FXTAS. We identified multiple modifiers of toxicity and RAN translation from an expanded CGG repeat in the context of the FMR1 5'UTR. These include the DEAD-box RNA helicase belle/DDX3X, the helicase accessory factors EIF4B/4H, and the start codon selectivity factors EIF1 and EIF5. Disrupting belle/DDX3X selectively inhibited FMR1 RAN translation in Drosophila in vivo and cultured human cells, and mitigated repeat-induced toxicity in Drosophila and primary rodent neurons. These findings implicate RNA secondary structure and start codon fidelity as critical elements mediating FMR1 RAN translation and identify potential targets for treating repeat-associated neurodegeneration.

Indexed as

AnimalsAtaxiaCells, CulturedDEAD-box RNA HelicasesDrosophila melanogasterDrosophila ProteinsEukaryotic Initiation FactorsFemaleFragile X Messenger Ribonucleoprotein 1Fragile X SyndromeHEK293 CellsHeLa CellsHumansImmunoprecipitationMalePhenotypeDEAD-box RNA HelicasesDrosophila ProteinsEukaryotic Initiation FactorsFMR1 protein, DrosophilaFragile X Messenger Ribonucleoprotein 1DDX3XeIFFragile X-associated tremor/ataxia syndromeRAN translationRNA helicase

Identifiers

PMID31347257
PMCPMC6726903
OpenAlexW2965188503

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.