Evidence map›Paper›PMID 31346717›Full record

ArticlePlant cell reports2019

A single amino acid change at position 96 (Arg to His) of the sweetpotato Orange protein leads to carotenoid overaccumulation.

So-Eun Kim, Ho Soo Kim, Zhi Wang, Qingbo Ke, Chan-Ju Lee, Sul-U Park, Ye-Hoon Lim, Woo Sung Park, Mi-Jeong Ahn, Sang-Soo Kwak

Abstract read
PubMed Publisher
In one paragraph

Article in Plant cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Overexpression of the Golden SNP-CarryingAntioxidants (Basel, Switzerland) · 2021
    Article
  11. Article
  12. Review
  13. Article
  14. Characterization of Cauliflower OR Mutant Variants.Frontiers in plant science · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

So-Eun KimPlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahak-ro, Daejeon, 34141, Korea.
Ho Soo KimPlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahak-ro, Daejeon, 34141, Korea.
Zhi WangInstitute of Soil and Water Conservation, Northwest A & F University, Yangling, 712100, Shaanxi, China.
Qingbo KeInstitute of Soil and Water Conservation, Northwest A & F University, Yangling, 712100, Shaanxi, China.
Chan-Ju LeePlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahak-ro, Daejeon, 34141, Korea.
Sul-U ParkPlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahak-ro, Daejeon, 34141, Korea.
Ye-Hoon LimPlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahak-ro, Daejeon, 34141, Korea.
Woo Sung ParkCollege of Pharmacy and Research Institute of Life Sciences, Gyeongsang National University, 501 Jinjudae-ro, Jinju, 52828, Korea.
Mi-Jeong AhnCollege of Pharmacy and Research Institute of Life Sciences, Gyeongsang National University, 501 Jinjudae-ro, Jinju, 52828, Korea.
Sang-Soo KwakPlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahak-ro, Daejeon, 34141, Korea. sskwak@kribb.re.kr.
Korea University of Science and Technology · KRGyeongsang National University · KRInstitute of Soil and Water Conservation · CNKorea Research Institute of Bioscience and Biotechnology · KR

Funding

National Natural Science Foundation 31700335Systems & Synthetic Agrobiotech Center PJ01318401Systems & Synthetic Agrobiotech Center PJ01318402
6 · The paper itself

Abstract

key messageIbOr-R96H resulted in carotenoid overaccumulation and enhanced abiotic stress tolerance in transgenic sweetpotato calli. The Orange (Or) protein is involved in the regulation of carotenoid accumulation and tolerance to various environmental stresses. Sweetpotato IbOr, with strong holdase chaperone activity, protects a key enzyme, phytoene synthase (PSY), in the carotenoid biosynthetic pathway and stabilizes a photosynthetic component, oxygen-evolving enhancer protein 2-1 (PsbP), under heat and oxidative stresses in plants. Previous studies of various plant species demonstrated that a single-nucleotide polymorphism (SNP) from Arg to His in Or protein promote a high level of carotenoid accumulation. Here, we showed that the substitution of a single amino acid at position 96 (Arg to His) of wild-type IbOr (referred to as IbOr-R96H) dramatically increases carotenoid accumulation. Sweetpotato calli overexpressing IbOr-WT or IbOr-Ins exhibited 1.8- or 4.3-fold higher carotenoid contents than those of the white-fleshed sweetpotato Yulmi (Ym) calli, and IbOr-R96H overexpression substantially increased carotenoid accumulation by up to 23-fold in sweetpotato calli. In particular, IbOr-R96H transgenic calli contained 88.4-fold higher levels of β-carotene than those in Ym calli. Expression levels of carotenogenesis-related genes were significantly increased in IbOr-R96H transgenic calli. Interestingly, transgenic calli overexpressing IbOr-R96H showed increased tolerance to salt and heat stresses, with similar levels of malondialdehyde to those in calli expressing IbOr-WT or IbOr-Ins. These results suggested that IbOr-R96H is a useful target for the generation of efficient industrial plants, including sweetpotato, to cope with growing food demand and climate change by enabling sustainable agriculture on marginal lands.

Indexed as

Amino Acid Substitutionbeta CaroteneCarotenoidsHeat-Shock ResponseIpomoea batatasMolecular ChaperonesPlant ProteinsPlants, Genetically ModifiedSalt ToleranceStress, Physiologicalbeta CaroteneCarotenoidsMolecular ChaperonesPlant ProteinsCarotenoidIbOrIbOr-R96HMetabolic engineeringSweetpotato

Identifiers

PMID31346717
OpenAlexW2963030007

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.