Evidence map›Paper›PMID 31346607›Full record

ArticleBiology of reproduction2019

Inosine RNA modifications are enriched at the codon wobble position in mouse oocytes and eggs†.

Pavla Brachova, Nehemiah S Alvarez, Xiaoman Hong, Sumedha Gunewardena, Kailey A Vincent, Keith E Latham, Lane K Christenson

Open access · greenAbstract read
In one paragraph

Article in Biology of reproduction, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
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  5. The extensive mNature communications · 2024
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  8. Review
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  10. Loss ofInternational journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Pavla BrachovaDepartment of Molecular and Integrative Physiology, University of Kansas Medical Center, Kansas City, KS, USA.
Nehemiah S AlvarezDepartment of Molecular and Integrative Physiology, University of Kansas Medical Center, Kansas City, KS, USA.
Xiaoman HongDepartment of Molecular and Integrative Physiology, University of Kansas Medical Center, Kansas City, KS, USA.
Sumedha GunewardenaDepartment of Molecular and Integrative Physiology, University of Kansas Medical Center, Kansas City, KS, USA.
Kailey A VincentDepartment of Animal Science and Reproductive and Developmental Sciences Program, Michigan State University, East Lansing, MI, USA.
Keith E LathamDepartment of Animal Science and Reproductive and Developmental Sciences Program, Michigan State University, East Lansing, MI, USA.
Lane K ChristensonDepartment of Molecular and Integrative Physiology, University of Kansas Medical Center, Kansas City, KS, USA.
University of Kansas Medical Center · USMichigan State University · US

Funding

Transgenic and Gener-Targeting CoreP20GM104936 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI TRAN, PAMELA VIVIAN · 2012 to 2016
$10.9M
Using PCORnet to Expand the DS-CONNECT Cohort Through Healthcare System Recruitment, Incorporating Electronic Health Records, and Assessing Self-DeterminationU54HD090216 · NICHD · UNIVERSITY OF KANSAS LAWRENCE · PI COLOMBO, JOHN A. · 2016 to 2020
$6.2M
Participant Recruitment and ManagementP30DC005803 · NIDCD · UNIVERSITY OF KANSAS LAWRENCE · PI RICE, MABEL L · 2002 to 2016
$5.8M
Primate Embryo Gene Expression ResourceR24OD012221 · OD · TEMPLE UNIV OF THE COMMONWEALTH · PI LATHAM, KEITH E · 2012 to 2016
$3.0M
Mitochondrial RNA defense pathways in the oocyteR01HD094545 · NICHD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI CHRISTENSON, LANE K. · 2018 to 2022
$1.8M
High Throughput Sequencing System for KUMC Genomics CoreS10OD021743 · OD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI SMITH, PETER G · 2017 to 2017
$493k
A-to-I RNA modifications in mouse oocytesK99HD099269 · NICHD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI BRACHOVA, PAVLA · 2019 to 2020
$235k
Role of Follicular Fluid Exosomes on Ovarian/Fallopian CarcinogenesisF32CA200357 · NCI · UNIVERSITY OF KANSAS MEDICAL CENTER · PI BRACHOVA, PAVLA · 2016 to 2017
$118k
NCI NIH HHS F32 CA200357NICHD NIH HHS K99 HD099269NICHD NIH HHS R01 HD094545NICHD NIH HHS U54 HD090216NIDCD NIH HHS P30 DC005803NIGMS NIH HHS P20 GM104936NIH HHS R24 OD012221NIH HHS S10 OD021743
6 · The paper itself

Abstract

Mammalian oocytes and eggs are transcriptionally quiescent and depend on post-transcriptional mechanisms for proper maturation. Post-transcriptional mRNA modifications comprise an important regulatory mechanism that can alter protein and miRNA recognition sites, splicing, stability, secondary structure, and protein coding. We discovered that fully grown mouse germinal vesicle oocytes and metaphase II eggs display abundant inosine mRNA modifications compared to growing oocytes from postnatal day 12 oocytes. These inosines were enriched in mRNA protein coding regions (CDS) and specifically located at the third codon base, or wobble position. Inosines, observed at lower frequencies in CDS of somatic tissues, were similarly enriched at the codon wobble position. In oocytes and eggs, inosine modifications lead primarily to synonymous changes in mRNA transcripts. Inosines may ultimately affect maternal mRNA stability by changing codon usage, thereby altering translational efficiency and translationally coupled mRNA degradation. These important observations advance our understanding of post-transcriptional mechanisms contributing to mammalian oocyte maturation.

Indexed as

Adenosine DeaminaseAnimalsCodonFemaleGene Expression RegulationInosineMiceOocytesOogenesisOvumRNA, MessengerRNA Processing, Post-TranscriptionalADAR1 protein, mouseAdenosine DeaminaseCodonInosineRNA, MessengerADAR RNA editinginosineoocytepost-transcriptional regulationRNA modifications

Identifiers

PMID31346607
PMCPMC6877758
OpenAlexW2965928314

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.