Evidence map›Paper›PMID 31346242›Full record

ArticleScientific reports2019

Protein tertiary structure and the myoglobin phase diagram.

Alexander Begun, Alexander Molochkov, Antti J Niemi

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Alexander BegunLaboratory of Physics of Living Matter, Far Eastern Federal University, 690950, Sukhanova 8, Vladivostok, Russia.
Alexander MolochkovLaboratory of Physics of Living Matter, Far Eastern Federal University, 690950, Sukhanova 8, Vladivostok, Russia.
Antti J NiemiLaboratory of Physics of Living Matter, Far Eastern Federal University, 690950, Sukhanova 8, Vladivostok, Russia. Antti.Niemi@su.se.ORCID http://orcid.org/0000-0003-3408-5834

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We develop an effective theory approach to investigate the phase properties of globular proteins. Instead of interactions between individual atoms or localized interaction centers, the approach builds directly on the tertiary structure of a protein. As an example we construct the phase diagram of (apo)myoglobin with temperature (T) and acidity (pH) as the thermodynamical variables. We describe how myoglobin unfolds from the native folded state to a random coil when temperature and acidity increase. We confirm the presence of two molten globule folding intermediates, and we predict an abrupt transition between the two when acidity changes. When temperature further increases we find that the abrupt transition line between the two molten globule states terminates at a tricritical point, where the helical structures fade away. Our results also suggest that the ligand entry and exit is driven by large scale collective motions that destabilize the myoglobin F-helix.

Indexed as

Models, MolecularMyoglobinProtein FoldingProtein Structure, TertiaryMyoglobin

Identifiers

PMID31346242
PMCPMC6658483

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.