Evidence map›Paper›PMID 31346205›Full record

ArticleScientific reports2019

Phylogeographic and genetic characterization of porcine circovirus type 2 in Taiwan from 2001-2017.

Guang-Ting Tsai, Yung-Cheng Lin, Wei-Hao Lin, Jih-Hui Lin, Ming-Tang Chiou, Hsin-Fu Liu, Chao-Nan Lin

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Guang-Ting TsaiDepartment of Veterinary Medicine, College of Veterinary Medicine, National Pingtung University of Science and Technology, Neipu, Pingtung, Taiwan.
Yung-Cheng LinDepartment of Medical Research, Mackay Memorial Hospital, Taipei, Taiwan.ORCID http://orcid.org/0000-0003-3672-3000
Wei-Hao LinDepartment of Veterinary Medicine, College of Veterinary Medicine, National Pingtung University of Science and Technology, Neipu, Pingtung, Taiwan.
Jih-Hui LinCenter of Diagnostics and Vaccine Development, Centers for Disease Control, Taiwan, Taipei, Taiwan.
Ming-Tang ChiouDepartment of Veterinary Medicine, College of Veterinary Medicine, National Pingtung University of Science and Technology, Neipu, Pingtung, Taiwan. mtchiou@mail.npust.edu.tw.
Hsin-Fu LiuDepartment of Medical Research, Mackay Memorial Hospital, Taipei, Taiwan. hsinfu@mmh.org.tw.ORCID http://orcid.org/0000-0003-0082-2269
Chao-Nan LinDepartment of Veterinary Medicine, College of Veterinary Medicine, National Pingtung University of Science and Technology, Neipu, Pingtung, Taiwan. cnlin6@mail.npust.edu.tw.ORCID http://orcid.org/0000-0003-1911-7535

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Porcine circovirus type 2 (PCV2) is an important pathogen that causes significant economic losses in the swine industry worldwide. Five major PCV2 genotypes have been identified, including PCV2a, PCV2b, PCV2c, PCV2d, and PCV2e. To investigate the prevalence and phylodynamics of the different PCV2 genotypes in Taiwan, 214 PCV2 ORF2 sequences from Taiwan and other countries were analyzed. Genotypic differences were observed among PCV2a, 2b, and 2d at amino acid position 89 in ORF2, with isoleucine (I), arginine (R), and leucine (L), respectively. Similar to other countries, a genotypic shift was also observed in Taiwan, where the predominant genotype shifted from PCV2b to 2d after 2010. The estimated nucleotide substitution rate of Taiwanese strains in the ORF2 region was 8.467 × 10

Indexed as

PhylogenyAnimalsCircoviridae InfectionsCircovirusEvolution, MolecularGenome, ViralPolymorphism, GeneticSwineSwine DiseasesTaiwanViral ProteinsViral Proteins

Identifiers

PMID31346205
PMCPMC6658515

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.