Evidence map›Paper›PMID 31346084›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Autophagy genes in myeloid cells counteract IFNγ-induced TNF-mediated cell death and fatal TNF-induced shock.

Anthony Orvedahl, Michael R McAllaster, Amy Sansone, Bria F Dunlap, Chandni Desai, Ya-Ting Wang, Dale R Balce, Cliff J Luke, Sanghyun Lee, Robert C Orchard and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 44 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Anthony OrvedahlDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO 63110; aorvedahl@wustl.edu svirgin@vir.bio.ORCID 0000-0002-2481-9200
Michael R McAllasterDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110.
Amy SansoneDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO 63110.
Bria F DunlapDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110.
Chandni DesaiDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110.
Ya-Ting WangDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110.
Dale R BalceDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110.
Cliff J LukeDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO 63110.
Sanghyun LeeDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110.
Robert C OrchardDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110.
Maxim N ArtyomovDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110.
Scott A HandleyDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110.
John G DoenchBroad Institute of MIT and Harvard, Cambridge, MA 02142.
Gary A SilvermanDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO 63110.
Herbert W VirginDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110; aorvedahl@wustl.edu svirgin@vir.bio.ORCID 0000-0001-8580-7628
Washington University in St. Louis · USBroad Institute · US

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI AIMEE S JAMES · 2001 to 2026
$128.0M
RP5: Chemical proteomic discovery of small-molecule probes for autophagy proteinsU19AI142784 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI VIRGIN, HERBERT W · 2019 to 2023
$36.9M
Genetic and Pathway Analysis CoreU19AI109725 · NIAID · WASHINGTON UNIVERSITY · PI VIRGIN, HERBERT W · 2014 to 2018
$32.7M
Pediatric Infectious Diseases and Immunity Training ProgramT32AI106688 · NIAID · WASHINGTON UNIVERSITY · PI Megan Anne Cooper, DAVID HUNSTAD · 2014 to 2026
$1.9M
Inhibitors of Intestinal Epithelial Cell Lysosomal-Mediated NecrosisR01DK114047 · NIDDK · WASHINGTON UNIVERSITY · PI LUKE, CLIFFORD JAMES, SILVERMAN, GARY ARTHUR · 2018 to 2021
$1.7M
Genetic Modifiers Affecting Cellular Injury in Alpha-1-Antitrypsin DeficiencyR01DK104946 · NIDDK · WASHINGTON UNIVERSITY · PI SILVERMAN, GARY ARTHUR · 2016 to 2019
$1.4M
Identification and Characterization of Norovirus Cofactors for EntryR00DK116666 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI ORCHARD, ROBERT C. · 2018 to 2020
$747k
Identification and Characterization of Norovirus Cofactors for EntryK99DK116666 · NIDDK · WASHINGTON UNIVERSITY · PI ORCHARD, ROBERT C. · 2017 to 2017
$90k
NCI NIH HHS P30 CA091842NIAID NIH HHS T32 AI106688NIAID NIH HHS U19 AI109725NIAID NIH HHS U19 AI142784NIDDK NIH HHS K99 DK116666NIDDK NIH HHS R00 DK116666NIDDK NIH HHS R01 DK104946NIDDK NIH HHS R01 DK114047
6 · The paper itself

Abstract

Host inflammatory responses must be tightly regulated to ensure effective immunity while limiting tissue injury. IFN gamma (IFNγ) primes macrophages to mount robust inflammatory responses. However, IFNγ also induces cell death, and the pathways that regulate IFNγ-induced cell death are incompletely understood. Using genome-wide CRISPR/Cas9 screening, we identified autophagy genes as central mediators of myeloid cell survival during the IFNγ response. Hypersensitivity of autophagy gene-deficient cells to IFNγ was mediated by tumor necrosis factor (TNF) signaling via receptor interacting protein kinase 1 (RIPK1)- and caspase 8-mediated cell death. Mice with myeloid cell-specific autophagy gene deficiency exhibited marked hypersensitivity to fatal systemic TNF administration. This increased mortality in myeloid autophagy gene-deficient mice required the IFNγ receptor, and mortality was completely reversed by pharmacologic inhibition of RIPK1 kinase activity. These findings provide insight into the mechanism of IFNγ-induced cell death via TNF, demonstrate a critical function of autophagy genes in promoting cell viability in the presence of inflammatory cytokines, and implicate this cell survival function in protection against mortality during the systemic inflammatory response.

Indexed as

AnimalsAutophagyAutophagy-Related Protein 5Cell LineCell SurvivalCRISPR-Cas SystemsCytoprotectionGenomeInterferon-gammaMice, KnockoutMyeloid CellsNF-kappa BReceptor-Interacting Protein Serine-Threonine KinasesReceptors, Tumor Necrosis Factor, Type ISignal TransductionTranscriptomeAutophagy-Related Protein 5Interferon-gammaNF-kappa BReceptor-Interacting Protein Serine-Threonine KinasesReceptors, Tumor Necrosis Factor, Type IRipk1 protein, mouseTumor Necrosis Factor-alphaautophagycell deathinterferonsepsisTNF

Identifiers

PMID31346084
PMCPMC6697821
OpenAlexW2963778214

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.