Evidence map›Paper›PMID 31345789›Full record

ArticleCancer discovery2019

Epigenomics and Single-Cell Sequencing Define a Developmental Hierarchy in Langerhans Cell Histiocytosis.

Florian Halbritter, Matthias Farlik, Raphaela Schwentner, Gunhild Jug, Nikolaus Fortelny, Thomas Schnöller, Hanja Pisa, Linda C Schuster, Andrea Reinprecht, Thomas Czech and 7 more

Abstract read
In one paragraph

Article in Cancer discovery, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 63 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Florian Halbritter *CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria.ORCID 0000-0003-2452-4784
Matthias Farlik *CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria.ORCID 0000-0003-0698-2992
Raphaela SchwentnerSt. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria.ORCID 0000-0001-6839-0322
Gunhild JugSt. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria.
Nikolaus FortelnyCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria.
Thomas SchnöllerSt. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria.
Hanja PisaSt. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria.
Linda C SchusterCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria.ORCID 0000-0003-3470-5490
Andrea ReinprechtDepartment of Neurosurgery, Medical University of Vienna, Vienna, Austria.ORCID 0000-0002-3019-4104
Thomas CzechDepartment of Neurosurgery, Medical University of Vienna, Vienna, Austria.
Johannes GojoDepartment of Pediatrics, Medical University of Vienna, Vienna, Austria.
Wolfgang HolterSt. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria.
Milen MinkovSt. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria.ORCID 0000-0001-6471-8423
Wolfgang M BauerDepartment of Dermatology, Medical University of Vienna, Vienna, Austria.ORCID 0000-0002-0155-1176
Ingrid Simonitsch-KluppClinical Institute of Pathology, Medical University of Vienna, Vienna, Austria.
Christoph BockCeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria. caroline.hutter@stanna.at cbock@cemm.oeaw.ac.at.ORCID 0000-0001-6091-3088
Caroline HutterSt. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria. caroline.hutter@stanna.at cbock@cemm.oeaw.ac.at.ORCID 0000-0003-2059-4814
St Anna Children's Hospital · ATMedical University of Vienna · ATCeMM Research Center for Molecular Medicine · ATMax Planck Institute for Informatics · DERudolfinerhaus Hospital · AT

Funding

Austrian Science Fund FWF F 6102European Research Council 679146
6 · The paper itself

Abstract

Langerhans cell histiocytosis (LCH) is a rare neoplasm predominantly affecting children. It occupies a hybrid position between cancers and inflammatory diseases, which makes it an attractive model for studying cancer development. To explore the molecular mechanisms underlying the pathophysiology of LCH and its characteristic clinical heterogeneity, we investigated the transcriptomic and epigenomic diversity in primary LCH lesions. Using single-cell RNA sequencing, we identified multiple recurrent types of LCH cells within these biopsies, including putative LCH progenitor cells and several subsets of differentiated LCH cells. We confirmed the presence of proliferative LCH cells in all analyzed biopsies using IHC, and we defined an epigenomic and gene-regulatory basis of the different LCH-cell subsets by chromatin-accessibility profiling. In summary, our single-cell analysis of LCH uncovered an unexpected degree of cellular, transcriptomic, and epigenomic heterogeneity among LCH cells, indicative of complex developmental hierarchies in LCH lesions. SIGNIFICANCE: This study sketches a molecular portrait of LCH lesions by combining single-cell transcriptomics with epigenome profiling. We uncovered extensive cellular heterogeneity, explained in part by an intrinsic developmental hierarchy of LCH cells. Our findings provide new insights and hypotheses for advancing LCH research and a starting point for personalizing therapy.

Indexed as

Epigenesis, GeneticEpigenomicsBiomarkersBiopsyDisease SusceptibilityGene Expression ProfilingGene Expression RegulationHigh-Throughput Nucleotide SequencingHistiocytosis, Langerhans-CellHumansImmunohistochemistryRadiographySingle-Cell AnalysisBiomarkers

Identifiers

PMID31345789
PMCPMC6795548
OpenAlexW2964254974

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.