Evidence map›Paper›PMID 31343403›Full record

ArticleeLife2019

Nanoscale organization of rotavirus replication machineries.

Yasel Garcés Suárez, Jose L Martínez, David Torres Hernández, Haydee Olinca Hernández, Arianna Pérez-Delgado, Mayra Méndez, Christopher D Wood, Juan Manuel Rendon-Mancha, Daniela Silva-Ayala, Susana López and 2 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Yasel Garcés Suárez *Departamento de Genética del Desarrollo y Fisiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Mexico City, Mexico.ORCID 0000-0001-8401-8352
Jose L Martínez *Departamento de Genética del Desarrollo y Fisiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Mexico City, Mexico.ORCID 0000-0002-0529-7558
David Torres HernándezDepartamento de Genética del Desarrollo y Fisiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Mexico City, Mexico.
Haydee Olinca HernándezDepartamento de Genética del Desarrollo y Fisiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Mexico City, Mexico.
Arianna Pérez-DelgadoDepartamento de Genética del Desarrollo y Fisiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Mexico City, Mexico.
Mayra MéndezCentro de Investigación en Ciencias, Instituto de Investigación en Ciencias Básicas y Aplicadas, Universidad Autónoma del Estado de Morelos, Cuernavaca, Mexico.
Christopher D WoodDepartamento de Genética del Desarrollo y Fisiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Mexico City, Mexico.
Juan Manuel Rendon-ManchaCentro de Investigación en Ciencias, Instituto de Investigación en Ciencias Básicas y Aplicadas, Universidad Autónoma del Estado de Morelos, Cuernavaca, Mexico.ORCID 0000-0002-9629-7050
Daniela Silva-AyalaDepartamento de Genética del Desarrollo y Fisiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Mexico City, Mexico.
Susana LópezDepartamento de Genética del Desarrollo y Fisiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Mexico City, Mexico.
Adán GuerreroDepartamento de Genética del Desarrollo y Fisiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Mexico City, Mexico.ORCID 0000-0002-4389-5516
Carlos F AriasDepartamento de Genética del Desarrollo y Fisiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Mexico City, Mexico.ORCID 0000-0003-3130-4501
Universidad Nacional Autónoma de México · MXUniversidad Autónoma del Estado de Morelos · MXHarvard University · US

Funding

Conacyt-Mexico 252213Consejo Nacional de Ciencia y Tecnología 252213DGAPA-PAPIIT-UNAM IA202417DGAPA-PAPIIT-UNAM IG200317DGAPA-PAPIIT-UNAM IN202312DGTIC-UNAM SC15-1-IR-89DGTIC-UNAM SC16-1-IR-102Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México IA202417Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México IG200317Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México IN202312Universidad Nacional Autónoma de México SC15-1-IR-89Universidad Nacional Autónoma de México SC16-1-IR-102
6 · The paper itself

Abstract

Rotavirus genome replication and assembly take place in cytoplasmic electron dense inclusions termed viroplasms (VPs). Previous conventional optical microscopy studies observing the intracellular distribution of rotavirus proteins and their organization in VPs have lacked molecular-scale spatial resolution, due to inherent spatial resolution constraints. In this work we employed super-resolution microscopy to reveal the nanometric-scale organization of VPs formed during rotavirus infection, and quantitatively describe the structural organization of seven viral proteins within and around the VPs. The observed viral components are spatially organized as five concentric layers, in which NSP5 localizes at the center of the VPs, surrounded by a layer of NSP2 and NSP4 proteins, followed by an intermediate zone comprised of the VP1, VP2, VP6. In the outermost zone, we observed a ring of VP4 and finally a layer of VP7. These findings show that rotavirus VPs are highly organized organelles.

Indexed as

Virus ReplicationAnimalsCell LineEpithelial CellsMacaca mulattaMicroscopy, FluorescenceRotavirusSpatial AnalysisViral ProteinsViral Proteinsinfectious diseasemicrobiologyrotavirussuper resolution microscopyviroplasmsvirus

Identifiers

PMID31343403
PMCPMC6692110
OpenAlexW2964124643

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.