Evidence map›Paper›PMID 31342608›Full record

ArticleAngewandte Chemie (International ed. in English)2019

Diketopiperazine Formation in Fungi Requires Dedicated Cyclization and Thiolation Domains.

Joshua A Baccile, Henry H Le, Brandon T Pfannenstiel, Jin Woo Bok, Christian Gomez, Eileen Brandenburger, Dirk Hoffmeister, Nancy P Keller, Frank C Schroeder

Open access · greenAbstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Genetic Survey of Psilocybe Natural Products.Chembiochem : a European journal of chemical biology · 2022
    Article
  10. Review
  11. Article
  12. An interpreted atlas of biosynthetic gene clusters from 1,000 fungal genomes.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  13. Article
  14. Article
  15. Efficient nonenzymatic cyclization and domain shuffling drive pyrrolopyrazine diversity from truncated variants of a fungal NRPS.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Joshua A BaccileBoyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.
Henry H LeBoyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.
Brandon T PfannenstielDepartments of Bacteriology, Medical Microbiology and Immunology, University of Wisconsin-Madison, Madison, WI, USA.
Jin Woo BokDepartments of Bacteriology, Medical Microbiology and Immunology, University of Wisconsin-Madison, Madison, WI, USA.
Christian GomezBoyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.
Eileen BrandenburgerDepartment of Pharmaceutical Microbiology, Hans-Knöll-Institute, Friedrich Schiller University, Jena, Germany.
Dirk HoffmeisterDepartment of Pharmaceutical Microbiology, Hans-Knöll-Institute, Friedrich Schiller University, Jena, Germany.
Nancy P KellerDepartments of Bacteriology, Medical Microbiology and Immunology, University of Wisconsin-Madison, Madison, WI, USA.
Frank C SchroederBoyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.ORCID 0000-0002-4420-0237
Cornell University · USUniversity of Wisconsin–Madison · USLeibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. - Hans-Knöll-Institut (HKI) · DECalifornia Institute of Technology · US

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007133 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI PERNA, NICOLE T · 1985 to 2023
$16.5M
CHEMISTRY OF BIOLOGICAL SYSTEMST32GM008500 · NIGMS · CORNELL UNIVERSITY ITHACA · PI LIN, HENING · 1996 to 2020
$5.4M
Comprehensive analysis of NRPS-derived metabolomes of three Aspergillus speciesR01GM112739 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI KELLER, NANCY P · 2015 to 2023
$2.8M
NIGMS NIH HHS R01 GM112739NIGMS NIH HHS T32 GM007133NIGMS NIH HHS T32 GM008500
6 · The paper itself

Abstract

Cyclization of linear dipeptidyl precursors derived from nonribosomal peptide synthetases (NRPSs) into 2,5-diketopiperazines (DKPs) is a crucial step in the biosynthesis of a large number of bioactive natural products. However, the mechanism of DKP formation in fungi has remained unclear, despite extensive studies of their biosyntheses. Here we show that DKP formation en route to the fungal virulence factor gliotoxin requires a seemingly extraneous couplet of condensation (C) and thiolation (T) domains in the NRPS GliP. In vivo truncation of GliP to remove the CT couplet or just the T domain abrogated production of gliotoxin and all other gli pathway metabolites. Point mutation of conserved active sites in the C and T domains diminished cyclization activity of GliP in vitro and abolished gliotoxin biosynthesis in vivo. Verified NRPSs of other fungal DKPs terminate with similar CT domain couplets, suggesting a conserved strategy for DKP biosynthesis by fungal NRPSs.

Indexed as

Aspergillus fumigatusDiketopiperazinesGene Expression Regulation, FungalGliotoxinMolecular StructureDiketopiperazinesGliotoxinbiosynthesiscyclizationgliotoxinnatural productsnonribosomal peptide synthetase

Identifiers

PMID31342608
PMCPMC6764874
OpenAlexW2963862107

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.