Evidence map›Paper›PMID 31341245›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2019

Oncogenic effects of germline variants in lysosomal storage disease genes.

Junghoon Shin, Daeyoon Kim, Hyung-Lae Kim, Murim Choi, Youngil Koh, Sung-Soo Yoon

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Junghoon ShinDivision of Hematology and Medical Oncology, Department of Internal Medicine, Seoul National University Hospital, Seoul, Korea.ORCID http://orcid.org/0000-0002-6834-7217
Daeyoon KimCancer Research Institute, Seoul National University College of Medicine, Seoul, Korea.
Hyung-Lae KimDepartment of Biochemistry, Ewha Woman's University School of Medicine, Seoul, Korea.
Murim ChoiDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, Korea.
Youngil KohDivision of Hematology and Medical Oncology, Department of Internal Medicine, Seoul National University Hospital, Seoul, Korea. go01@snu.ac.kr.ORCID http://orcid.org/0000-0002-4750-931X
Sung-Soo YoonDivision of Hematology and Medical Oncology, Department of Internal Medicine, Seoul National University Hospital, Seoul, Korea. ssysmc@snu.ac.kr.ORCID http://orcid.org/0000-0003-2591-7459
Seoul National University · KRSeoul National University Hospital · KREwha Womans University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeClinical and experimental evidence has suggested pathobiological crosstalk between lysosomal storage diseases (LSDs) and cancer. We aimed to elucidate the association between germline variants in LSD genes and cancer.

methodsWe performed aggregate rare variant association analysis of potentially pathogenic variants (PPVs) in 42 LSD genes and >30 histological types of cancer using genome sequencing data from 2567 cancer patients (Pan-Cancer cohort) and 2504 healthy individuals (1000 Genomes cohort) and exome sequencing data from 53,105 individuals without cancer (ExAC cohort).

resultsPPVs were significantly enriched in the Pan-Cancer cohort compared with the 1000 Genomes cohort (PPV prevalence, 20.7% vs. 13.5%; P = 8.7 × 10

conclusionCarriers of PPVs in LSD genes are at increased risk of cancer.

Indexed as

Case-Control StudiesChromosome MappingCohort StudiesDatabases, GeneticExomeExome SequencingFemaleGenetic Predisposition to DiseaseGerm CellsGerm-Line MutationHumansLysosomal Storage DiseasesMaleNeoplasmsRisk Factorsassociation studycancergermline variantlysosomal storage diseaserare variant

Identifiers

PMID31341245
OpenAlexW2963384210

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.