Evidence map›Paper›PMID 31341170›Full record

ArticleScientific data2019

Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean.

Surendra Neupane, Febina M Mathew, Adam J Varenhorst, Madhav P Nepal

Abstract readDataset
In one paragraph

Article in Scientific data, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Tissue- and Condition-Specific Biosynthesis of Ascorbic Acid inInternational journal of molecular sciences · 2025
    Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Characterization ofInsects · 2019
    Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Surendra NeupaneDepartment of Biology and Microbiology, South Dakota State University, Brookings, SD, 57007, USA.ORCID http://orcid.org/0000-0002-3175-9023
Febina M MathewDepartment of Agronomy, Horticulture and Plant Science, South Dakota State University, Brookings, SD, 57007, USA.
Adam J VarenhorstDepartment of Agronomy, Horticulture and Plant Science, South Dakota State University, Brookings, SD, 57007, USA.
Madhav P NepalDepartment of Biology and Microbiology, South Dakota State University, Brookings, SD, 57007, USA. madhav.nepal@sdstate.edu.ORCID http://orcid.org/0000-0001-5565-523X

Funding

U.S. Department of Agriculture (United States Department of Agriculture) SD00H469-13
6 · The paper itself

Abstract

Soybean aphid (Aphis glycines; SBA) and soybean cyst nematode (Heterodera glycines; SCN) are two major pests of soybean (Glycine max) in the United States of America. This study aims to characterize three-way interactions among soybean, SBA, and SCN using both demographic and genetic datasets. SCN-resistant and SCN-susceptible soybean cultivars with a combination of soybean aphids (biotype 1) and SCN (HG type 0) in a randomized complete block design (RCBD) with six blocks were used to evaluate the three-way interactions in a greenhouse setup. Treatments receiving SCN were infested at planting with 2000 nematode eggs, and the treatments with soybean aphids were infested at second trifoliate growth stage (V2) with 15 soybean aphids. The whole roots were sampled from plants at 5 and 30 days post SBA infestation for RNA sequencing using Illumina Hiseq. 3000. The data comprises of 47 libraries that are useful for further analyses of important genes, which are involved in interaction effects of SBA and SCN on soybean.

Indexed as

AphidsTranscriptomeAnimalsGene Expression ProfilingGlycine maxPlant DiseasesRNA-SeqTylenchoidea

Identifiers

PMID31341170
PMCPMC6656750

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.