Evidence map›Paper›PMID 31341063›Full record

ArticleScience translational medicine2019

The gut microbiota influences skeletal muscle mass and function in mice.

Shawon Lahiri, Hyejin Kim, Isabel Garcia-Perez, Musarrat Maisha Reza, Katherine A Martin, Parag Kundu, Laura M Cox, Joel Selkrig, Joram M Posma, Hongbo Zhang and 9 more

2 registry-linked trialsOpen access · greenAbstract read
In one paragraph

Article in Science translational medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 2 registered trials, which are not on this map. Cited by 368 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
368citing papers in PubMed, 4 pooled it
23.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04315714 nacompletednot on this mapstarted 2021, after this paper: background citation

Impact of a Yoga Intervention on Chronic Abdominal Pain, and Associations With the Metagenome and Metabolome in Participants With IBS

TypeinterventionalSponsorUniversity of Maryland, BaltimoreRan2021 to 2021Enrolled17ConditionsIrritable Bowel Syndrome, Abdominal PainArmsYoga Program
NCT07356440 naactive not recruitingnot on this mapstarted 2025, after this paper: background citation

Effect of Consumption of Vegetable Protein-enriched Biscuits and Vitamin D Supplementation on the Progression of Sarcopenia in Elderly Subjects

TypeinterventionalSponsorUniversity of UdineRan2025 to 2026Enrolled74ConditionsSarcopenia in Elderly, Sarcopenia, Nutritional Intervention, Microbiome AnalysisArmsVitamin D3 supplement, Protein-enriched biscuits, Control biscuit, Placebo oil
3 · Its place in the literature

Who cites it

368 citing papers in PubMed, 4 syntheses or guidelines pooled it, 513 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Trial
  6. Trial
  7. PasteurizedNutrients · 2024
    Trial
  8. Efficacy ofNutrients · 2024
    Trial
  9. Trial
  10. Eight Weeks ofNutrients · 2023
    Trial
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Review
  20. Links between bone fractures and the gut microbiota.Nature reviews. Endocrinology · 2026
    Review

308 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 9 institutions in 9 countries.

Shawon LahiriDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, Sweden. sven.pettersson@ki.se shawonlahiri@gmail.com.ORCID 0000-0002-4466-383X
Hyejin KimLee Kong Chian School of Medicine, Nanyang Technological University, Singapore, Singapore.ORCID 0000-0003-3734-8935
Isabel Garcia-PerezDivision of Computational and Systems Medicine, Department of Surgery and Cancer, Sir Alexander Fleming Building, Imperial College London, London SW72AZ, UK.ORCID 0000-0001-8398-0603
Musarrat Maisha RezaDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, Sweden.ORCID 0000-0002-2098-2369
Katherine A MartinLee Kong Chian School of Medicine, Nanyang Technological University, Singapore, Singapore.ORCID 0000-0001-8034-2745
Parag KunduLee Kong Chian School of Medicine, Nanyang Technological University, Singapore, Singapore.ORCID 0000-0002-8684-7530
Laura M CoxAnn Romney Center for Neurologic Diseases, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-9564-9894
Joel SelkrigLee Kong Chian School of Medicine, Nanyang Technological University, Singapore, Singapore.ORCID 0000-0003-2977-4408
Joram M PosmaDivision of Computational and Systems Medicine, Department of Surgery and Cancer, Sir Alexander Fleming Building, Imperial College London, London SW72AZ, UK.ORCID 0000-0002-4971-9003
Hongbo ZhangLaboratory of Integrative and Systems Physiology, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.ORCID 0000-0002-4081-5752
Parasuraman PadmanabhanLee Kong Chian School of Medicine, Nanyang Technological University, Singapore, Singapore.ORCID 0000-0003-4112-4600
Catherine MoretCenter for Integrative Genomics, University of Lausanne, Lausanne, Switzerland.ORCID 0000-0002-7669-2977
Balázs GulyásDepartment of Neuroscience and Mental Health, Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore, Singapore.ORCID 0000-0001-9295-2460
Martin J BlaserDepartment of Medicine, New York University School of Medicine, New York, NY 10016, USA.
Johan AuwerxLaboratory of Integrative and Systems Physiology, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.ORCID 0000-0002-5065-5393
Elaine HolmesDivision of Computational and Systems Medicine, Department of Surgery and Cancer, Sir Alexander Fleming Building, Imperial College London, London SW72AZ, UK.ORCID 0000-0002-0556-8389
Jeremy NicholsonAustralian National Phenome Center, Murdoch University, WA 6150, Australia.
Walter WahliCenter for Integrative Genomics, University of Lausanne, Lausanne, Switzerland.
Sven PetterssonDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, Sweden. sven.pettersson@ki.se shawonlahiri@gmail.com.ORCID 0000-0001-8903-3738
Nanyang Technological University · SGImperial College London · GBBrigham and Women's Hospital · USÉcole Polytechnique Fédérale de Lausanne · CHMinistry of Education of the People's Republic of China · CNMurdoch University · AUSwedish Research Council · SEUniversity of Lausanne · CHVA NY Harbor Healthcare System · US

Funding

Disappearing gastrointestinal microbiota in epidemic obesity.R01DK090989 · NIDDK · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BLASER, MARTIN J · 2010 to 2015
$7.4M
Medical Research Council MR/S004033/1NIDDK NIH HHS R01 DK090989
6 · The paper itself

Abstract

The functional interactions between the gut microbiota and the host are important for host physiology, homeostasis, and sustained health. We compared the skeletal muscle of germ-free mice that lacked a gut microbiota to the skeletal muscle of pathogen-free mice that had a gut microbiota. Compared to pathogen-free mouse skeletal muscle, germ-free mouse skeletal muscle showed atrophy, decreased expression of insulin-like growth factor 1, and reduced transcription of genes associated with skeletal muscle growth and mitochondrial function. Nuclear magnetic resonance spectrometry analysis of skeletal muscle, liver, and serum from germ-free mice revealed multiple changes in the amounts of amino acids, including glycine and alanine, compared to pathogen-free mice. Germ-free mice also showed reduced serum choline, the precursor of acetylcholine, the key neurotransmitter that signals between muscle and nerve at neuromuscular junctions. Reduced expression of genes encoding Rapsyn and Lrp4, two proteins important for neuromuscular junction assembly and function, was also observed in skeletal muscle from germ-free mice compared to pathogen-free mice. Transplanting the gut microbiota from pathogen-free mice into germ-free mice resulted in an increase in skeletal muscle mass, a reduction in muscle atrophy markers, improved oxidative metabolic capacity of the muscle, and elevated expression of the neuromuscular junction assembly genes

Indexed as

AnimalsCell LineGastrointestinal MicrobiomeGerm-Free LifeInsulin-Like Growth Factor ILiverMaleMetabolomicsMiceMice, Inbred C57BLMuscle, SkeletalInsulin-Like Growth Factor I

Identifiers

PMID31341063
PMCPMC7501733
OpenAlexW2963465565

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.