Evidence map›Paper›PMID 31341053›Full record

ArticleJournal of virology2019

Frog Virus 3 Genomes Reveal Prevalent Recombination between Ranavirus Lineages and Their Origins in Canada.

Sibelle T Vilaça, Joe-Felix Bienentreu, Craig R Brunetti, David Lesbarrères, Dennis L Murray, Christopher J Kyle

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 39 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Sibelle T VilaçaBiology Department, Trent University, Peterborough, Ontario, Canada sibelletorres@gmail.com.ORCID 0000-0002-6887-4703
Joe-Felix BienentreuGenetics and Ecology of Amphibian Research Group (GEARG), Department of Biology, Laurentian University, Sudbury, Ontario, Canada.
Craig R BrunettiBiology Department, Trent University, Peterborough, Ontario, Canada.
David LesbarrèresGenetics and Ecology of Amphibian Research Group (GEARG), Department of Biology, Laurentian University, Sudbury, Ontario, Canada.
Dennis L MurrayBiology Department, Trent University, Peterborough, Ontario, Canada.
Christopher J KyleEnvironmental and Life Sciences Graduate Program, Trent University, Peterborough, Ontario, Canada.
Trent University · CALaurentian University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ranaviruses are pathogens associated with the decline of amphibian populations across much of their distribution. In North America, frog virus 3 (FV3) is a widely distributed pathogen with wild populations of amphibians harboring different lineages and putative recombinants between FV3 and common midwife toad virus (CMTV). These recombinants have higher pathogenicity, and CMTV-derived genes associated with virulence are reported in wild strains in Canada. However, while FV3 is linked to amphibian die-offs in North America, CMTVs have been reported only in commercial frog farms in North America. We sequenced complete genomes of 18 FV3 isolates from three amphibian species to characterize genetic diversity of the lineages in Canada and infer possible recombinant regions. The 18 FV3 isolates displayed different signals of recombination, varying from none to interspersed recombination with previously isolated CMTV-like viruses. In general, most recombination breakpoints were located within open reading frames (ORFs), generating new ORFs and proteins that were a mixture between FV3 and CMTV. A combined spatial and temporal phylogeny suggests the presence of the FV3 lineage in Canada is relatively contemporary (<100 years), corroborating the hypothesis that both CMTV- and FV3-like viruses spread to North America when the international commercial amphibian trade started. Our results highlight the importance of pathogen surveillance and viral dynamics using full genomes to more clearly understand the mechanisms of disease origin and spread.

Indexed as

Genome, ViralRecombination, GeneticAmphibiansAnimalsCanadaDNA Virus InfectionsEvolution, MolecularOpen Reading FramesPhylogenyPrevalenceRanavirusamphibiansCanadacommon midwife toad virusfrog virus 3full genomesranavirus

Identifiers

PMID31341053
PMCPMC6798099
OpenAlexW2963056293

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.