Evidence map›Paper›PMID 31341048›Full record

ArticleJournal of virology2019

Courtney L Steger, Mackenzie L Brown, Owen M Sullivan, Crystal E Boudreaux, Courtney A Cohen, Leslie E W LaConte, Sarah M McDonald

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Courtney L StegerTranslational Biology, Medicine, and Health Graduate Program, Virginia Tech, Blacksburg, Virginia, USA.
Mackenzie L BrownDepartment of Biology, Wake Forest University, Winston Salem, North Carolina, USA.
Owen M SullivanDepartment of Biology, Wake Forest University, Winston Salem, North Carolina, USA.
Crystal E BoudreauxWest Virginia School of Osteopathic Medicine, Lewisburg, West Virginia, USA.
Courtney A CohenU.S. Army Medical Research Institute for Infectious Diseases, Frederick, Maryland, USA.
Leslie E W LaConteFralin Biomedical Research Institute, Roanoke, Virginia, USA.
Sarah M McDonaldDepartment of Biology, Wake Forest University, Winston Salem, North Carolina, USA mcdonasm@wfu.edu.
Wake Forest University · USBiomedical Research Institute · USUnited States Army Medical Research Institute of Infectious Diseases · USVirginia Tech · USWest Virginia School of Osteopathic Medicine · US

Funding

Rotavirus Genome Replication and Virion AssemblyR01AI116815 · NIAID · WAKE FOREST UNIVERSITY · PI Sarah Marie McDonald Esstman · 2015 to 2026
$3.7M
NIAID NIH HHS R01 AI116815
6 · The paper itself

Abstract

The rotavirus polymerase VP1 mediates all stages of viral RNA synthesis within the confines of subviral particles and while associated with the core shell protein VP2. Transcription (positive-strand RNA [+RNA] synthesis) by VP1 occurs within double-layered particles (DLPs), while genome replication (double-stranded RNA [dsRNA] synthesis) by VP1 occurs within assembly intermediates. VP2 is critical for VP1 enzymatic activity; yet, the mechanism by which the core shell protein triggers polymerase function remains poorly understood. Structural analyses of transcriptionally competent DLPs show that VP1 is located beneath the VP2 core shell and sits slightly off-center from each of the icosahedral 5-fold axes. In this position, the polymerase is contacted by the core shell at 5 distinct surface-exposed sites, comprising VP1 residues 264 to 267, 547 to 550, 614 to 620, 968 to 980, and 1022 to 1025. Here, we sought to test the functional significance of these VP2 contact sites on VP1 with regard to polymerase activity. We engineered 19 recombinant VP1 (rVP1) proteins that contained single- or multipoint alanine mutations within each individual contact site and assayed them for the capacity to synthesize dsRNA

Indexed as

RotavirusAmino Acid SequenceBinding SitesCapsid ProteinsLoss of Function MutationModels, MolecularMutant ProteinsProtein BindingProtein ConformationRNA-Dependent RNA PolymeraseRNA, Double-StrandedRNA, ViralCapsid ProteinsMutant ProteinsRNA-Dependent RNA PolymeraseRNA, Double-StrandedRNA, Viralcore shell proteingenome replicationRNA-dependent RNA polymeraseRNA synthesisrotavirusVP1VP2

Identifiers

PMID31341048
PMCPMC6798093
OpenAlexW2963341906

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.