Evidence map›Paper›PMID 31341046›Full record

ArticleJournal of virology2019

Fitness Barriers Limit Reversion of a Proofreading-Deficient Coronavirus.

Kevin W Graepel, Maria L Agostini, Xiaotao Lu, Nicole R Sexton, Mark R Denison

Abstract read
In one paragraph

Article in Journal of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

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  11. Imposed mutational meltdown as an antiviral strategy.Evolution; international journal of organic evolution · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Kevin W GraepelDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Maria L AgostiniDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Xiaotao LuDepartment of Pediatrics, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Nicole R SextonDepartment of Microbiology, Immunology, and Pathology, College of Veterinary Medicine and Biomedical Sciences, Colorado State University, Fort Collins, Colorado, USA.
Mark R DenisonDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, Tennessee, USA mark.denison@vumc.org.
Vanderbilt University Medical Center · USColorado State University · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007347 · NIGMS · VANDERBILT UNIVERSITY · PI WILLIAMS, CHRISTOPHER S. · 1985 to 2023
$26.3M
Determinants of Coronavirus Fidelity in Replication and PathogenesisR01AI108197 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BARIC, RALPH S, DENISON, MARK R · 2013 to 2022
$6.5M
Virology Training ProgramT32AI089554 · NIAID · VANDERBILT UNIVERSITY · PI CROWE, JAMES E · 2010 to 2014
$816k
Roles of replication fidelity in viral RNA synthesis, population diversity, and overall fitness of coronavirusesF30AI129229 · NIAID · VANDERBILT UNIVERSITY · PI GRAEPEL, KEVIN WHITTLE · 2017 to 2020
$113k
Coronavirus antiviral nucleoside analogs: inhibition and reduced susceptibilityF31AI133952 · NIAID · VANDERBILT UNIVERSITY · PI AGOSTINI, MARIA · 2017 to 2019
$63k
NIAID NIH HHS F30 AI129229NIAID NIH HHS F31 AI133952NIAID NIH HHS R01 AI108197NIAID NIH HHS T32 AI089554NIGMS NIH HHS T32 GM007347
6 · The paper itself

Abstract

The 3'-to-5' exoribonuclease in coronavirus (CoV) nonstructural protein 14 (nsp14-ExoN) mediates RNA proofreading during genome replication. ExoN catalytic residues are arranged in three motifs: I (DE), II (E), and III (D). Alanine replacement of the motif I residues (AA-E-D; four nucleotide substitutions) in murine hepatitis virus (MHV) and severe acute respiratory syndrome (SARS)-CoV yields viable mutants with impaired replication and fitness, increased mutation rates, and attenuated virulence

Indexed as

Gene Expression Regulation, ViralGenetic FitnessAmino Acid MotifsCoronavirusCoronavirus InfectionsExoribonucleasesMutationProtein BindingVirus ReplicationExoribonucleasesadaptive evolutioncompetitive fitnesscoronavirusexoribonucleaseplus-strand RNA virusproofreadingreplication fidelityRNA virus

Identifiers

PMID31341046
PMCPMC6798108
OpenAlexW2963230130

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.