Evidence map›Paper›PMID 31341017›Full record

ArticleThe Journal of biological chemistry2019

The crystal structure of the protein kinase HIPK2 reveals a unique architecture of its CMGC-insert region.

Christopher Agnew, Lijun Liu, Shu Liu, Wei Xu, Liang You, Wayland Yeung, Natarajan Kannan, David Jablons, Natalia Jura

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.4field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
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  6. Article
  7. Computational analysis of regulatory regions in human protein kinases.Protein science : a publication of the Protein Society · 2023
    Article
  8. Review
  9. HIPK2 in the physiology of nervous system and its implications in neurological disorders.Biochimica et biophysica acta. Molecular cell research · 2023
    Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. The long-awaited structure of HIPK2.The Journal of biological chemistry · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Christopher AgnewCardiovascular Research Institute, University of California San Francisco, San Francisco, California 94158.ORCID 0000-0003-0934-5534
Lijun LiuCardiovascular Research Institute, University of California San Francisco, San Francisco, California 94158.
Shu LiuThoracic Oncology Laboratory, Department of Surgery, Comprehensive Cancer Center, University of California San Francisco, San Francisco, California 94115.
Wei XuThoracic Oncology Laboratory, Department of Surgery, Comprehensive Cancer Center, University of California San Francisco, San Francisco, California 94115.
Liang YouThoracic Oncology Laboratory, Department of Surgery, Comprehensive Cancer Center, University of California San Francisco, San Francisco, California 94115.
Wayland YeungInstitute of Bioinformatics and Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602.
Natarajan KannanInstitute of Bioinformatics and Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602.
David JablonsThoracic Oncology Laboratory, Department of Surgery, Comprehensive Cancer Center, University of California San Francisco, San Francisco, California 94115 david.jablons@ucsf.edu.
Natalia JuraCardiovascular Research Institute, University of California San Francisco, San Francisco, California 94158 natalia.jura@ucsf.edu.ORCID 0000-0001-5129-641X
University of California, San Francisco · USUniversity of Georgia · US

Funding

A data analytics framework for mining the dark kinomeU01CA239106 · NCI · UNIVERSITY OF GEORGIA · PI KANNAN, NATARAJAN, KOCHUT, KRZYSZTOF J · 2019 to 2021
$1.3M
NCI NIH HHS U01 CA239106
6 · The paper itself

Abstract

The homeodomain-interacting protein kinase (HIPK) family is comprised of four nuclear protein kinases, HIPK1-4. HIPK proteins phosphorylate a diverse range of transcription factors involved in cell proliferation, differentiation, and apoptosis. HIPK2, thus far the best-characterized member of this largely understudied family of protein kinases, plays a role in the activation of p53 in response to DNA damage. Despite this tumor-suppressor function, HIPK2 is also found overexpressed in several cancers, and its hyperactivation causes chronic fibrosis. There are currently no structures of HIPK2 or of any other HIPK kinase. Here, we report the crystal structure of HIPK2's kinase domain bound to CX-4945, a casein kinase 2α (CK2α) inhibitor currently in clinical trials against several cancers. The structure, determined at 2.2 Å resolution, revealed that CX-4945 engages the HIPK2 active site in a hybrid binding mode between that seen in structures of CK2α and Pim1 kinases. The HIPK2 kinase domain crystallized in the active conformation, which was stabilized by phosphorylation of the activation loop. We noted that the overall kinase domain fold of HIPK2 closely resembles that of evolutionarily related dual-specificity tyrosine-regulated kinases (DYRKs). Most significant structural differences between HIPK2 and DYRKs included an absence of the regulatory N-terminal domain and a unique conformation of the CMGC-insert region and of a newly defined insert segment in the αC-β4 loop. This first crystal structure of HIPK2 paves the way for characterizing the understudied members of the HIPK family and for developing HIPK2-directed therapies for managing cancer and fibrosis.

Indexed as

Amino Acid SequenceBinding SitesCarrier ProteinsCatalytic DomainCrystallography, X-RayEvolution, MolecularHumansMolecular Dynamics SimulationNaphthyridinesPhenazinesPhylogenyProtein BindingProtein Serine-Threonine KinasesProtein Structure, TertiaryRecombinant ProteinsSequence AlignmentCarrier ProteinsHIPK2 protein, humanNaphthyridinesPhenazinesProtein Serine-Threonine KinasesRecombinant ProteinssilmitasertibcancerCMGC superfamilyDYRK1Afibrosishomeodomain-interacting protein kinase 2 (HIPK2)inhibitorneurodegenerative diseaseserine/threonine protein kinasestructural biology

Identifiers

PMID31341017
PMCPMC6746438
OpenAlexW2963711666

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.