Evidence map›Paper›PMID 31340021›Full record

ArticleThe Journal of antimicrobial chemotherapy2019

Improved determination of Neisseria gonorrhoeae gyrase A genotype results in clinical specimens.

Lao-Tzu Allan-Blitz, Olivia L Ellis, Rachel Wee, Annie Truong, Samantha M Ebeyan, Lit Yeen Tan, Elisa Mokany, Risa Flynn, Jeffrey D Klausner

Abstract read
In one paragraph

Article in The Journal of antimicrobial chemotherapy, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
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  3. Extra-genitalInternational journal of STD & AIDS · 2023
    Article
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  5. Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Lao-Tzu Allan-BlitzDepartment of Medicine, Brigham and Women's Hospital, Boston, MA, USA.
Olivia L EllisDepartment of Environmental Health Sciences, Fielding School of Public Health, University of California, Los Angeles, CA, USA.
Rachel WeeSpeeDx Pty Ltd, Sydney, Australia.
Annie TruongSpeeDx Pty Ltd, Sydney, Australia.
Samantha M EbeyanSpeeDx Pty Ltd, Sydney, Australia.
Lit Yeen TanSpeeDx Pty Ltd, Sydney, Australia.
Elisa MokanySpeeDx Pty Ltd, Sydney, Australia.
Risa FlynnLesbian Gay Bisexual Transgender Health Center, Los Angeles, CA, USA.
Jeffrey D KlausnerDivision of Infectious Diseases, David Geffen School of Medicine, University of California, Los Angeles, CA, USA.

Funding

Controlling Drug Resistant Gonorrhea with Real-Time PCR Susceptibility TestingR21AI109005 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI KLAUSNER, JEFFREY DAVID · 2014 to 2015
$362k
NIAID NIH HHS R21 AI109005
6 · The paper itself

Abstract

backgroundThe emergence of drug-resistant Neisseria gonorrhoeae has prompted the development of rapid molecular assays designed to determine antimicrobial susceptibility. One common assay uses high-resolution melt analysis to target codon 91 of the gyrase A gene (gyrA) to predict N. gonorrhoeae susceptibility to ciprofloxacin.

methodsWe extracted DNA from remnant clinical specimens that had previously tested positive for N. gonorrhoeae using the Aptima Combo 2 for CT/NG assay (Hologic, San Diego, CA, USA). We selected DNA extracts from specimens with indeterminate, WT and mutant gyrA genotype results from a previous study using high-resolution melt analysis to detect the gyrA codon 91 mutation. We re-tested those specimens using the recently CE-marked ResistancePlus GC (beta) assay (SpeeDx, Sydney, Australia).

resultsOf 86 specimens with indeterminate gyrA genotypes on high-resolution melt analysis, the ResistancePlus GC (beta) assay (SpeeDx) identified 30 (35%) WT, 22 (26%) mutant and 34 (40%) indeterminate gyrA genotypes.

conclusionsThe ResistancePlus GC (beta) assay showed improved N. gonorrhoeae gyrA genotype determination compared with a prior gyrA genotypic high-resolution melt assay.

Indexed as

Anti-Bacterial AgentsCiprofloxacinDNA GyraseDrug Resistance, BacterialGenotypeGenotyping TechniquesGonorrheaHumansMicrobial Sensitivity TestsNeisseria gonorrhoeaeUnited StatesAnti-Bacterial AgentsCiprofloxacinDNA Gyrase

Identifiers

PMID31340021
PMCPMC8420954

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.