Evidence map›Paper›PMID 31340016›Full record

ArticleNucleic acids research2019

Phosphorylation orchestrates the structural ensemble of the intrinsically disordered protein HMGA1a and modulates its DNA binding to the NFκB promoter.

Bastian Kohl, Xueyin Zhong, Christian Herrmann, Raphael Stoll

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. The role of HMGA1 in genome stability: Implications in human cancer.Cellular and molecular life sciences : CMLS · 2026
    Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. The Chromatin Regulator HMGA1a Undergoes Phase Separation in the Nucleus.Chembiochem : a European journal of chemical biology · 2023
    Article
  8. Article
  9. The effect of HMGA1 in LPS-induced Myocardial Inflammation.International journal of biological sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Bastian KohlFaculty of Chemistry and Biochemistry, Biomolecular NMR Spectroscopy, Ruhr University of Bochum, Universitätsstraße 150, 44780 Bochum, Germany.
Xueyin ZhongFaculty of Chemistry and Biochemistry, Biomolecular NMR Spectroscopy, Ruhr University of Bochum, Universitätsstraße 150, 44780 Bochum, Germany.
Christian HerrmannFaculty of Chemistry and Biochemistry, Protein Interactions, Ruhr University of Bochum, Universitätsstraße 150, 44780 Bochum, Germany.
Raphael StollFaculty of Chemistry and Biochemistry, Biomolecular NMR Spectroscopy, Ruhr University of Bochum, Universitätsstraße 150, 44780 Bochum, Germany.
Ruhr University Bochum · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

High Mobility Group Protein A1a (HMGA1a) is a highly abundant nuclear protein, which plays a crucial role during embryogenesis, cell differentiation, and neoplasia. Here, we present the first ever NMR-based structural ensemble of full length HMGA1a. Our results show that the protein is not completely random coil but adopts a compact structure consisting of transient long-range contacts, which is regulated by post-translational phosphorylation. The CK2-, cdc2- and cdc2/CK2-phosphorylated forms of HMGA1a each exhibit a different binding affinity towards the PRD2 element of the NFκB promoter. Our study identifies connected regions between phosphorylation sites in the wildtype ensemble that change considerably upon phosphorylation, indicating that these posttranslational modifications sites are part of an electrostatic contact network that alters the structural ensemble by shifting the conformational equilibrium. Moreover, ITC data reveal that the CK2-phosphorylated HMGA1a exhibits a different DNA promoter binding affinity for the PRD2 element. Furthermore, we present the first structural model for AT-hook 1 of HMGA1a that can adopt a transient α-helical structure, which might serve as an additional regulatory mechanism in HMAG1a. Our findings will help to develop new therapeutic strategies against HMGA1a-associated cancers by taking posttranslational modifications into consideration.

Indexed as

Intrinsically Disordered ProteinsProtein FoldingCasein Kinase IICDC2 Protein KinaseDNAHMGA1a ProteinHumansModels, MolecularNF-kappa BNuclear Magnetic Resonance, BiomolecularPhosphorylationPromoter Regions, GeneticProtein BindingProtein Interaction Domains and MotifsProtein Processing, Post-TranslationalProtein Structure, SecondaryCasein Kinase IICDC2 Protein KinaseDNAHMGA1a ProteinIntrinsically Disordered ProteinsNF-kappa B

Identifiers

PMID31340016
PMCPMC7145567
OpenAlexW2963533778

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.