Evidence map›Paper›PMID 31339933›Full record

ArticlePLoS genetics2019

polyamine uptake transporter 2 (put2) and decaying seeds enhance phyA-mediated germination by overcoming PIF1 repression of germination.

Woohyun Kim, Sanja Ćavar Zeljković, Urszula Piskurewicz, Christian Megies, Petr Tarkowski, Luis Lopez-Molina

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. The polyamine uptake transporters PUT2/LAT4 and PUT5/LAT5 contribute to Arabidopsis defense response againstPhysiology and molecular biology of plants : an international journal of functional plant biology · 2025
    Article
  3. Article
  4. Influence of aPlants (Basel, Switzerland) · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Regulation of Photomorphogenic Development by Plant Phytochromes.International journal of molecular sciences · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Woohyun KimDepartment of Botany and Plant Biology, University of Geneva, Geneva, Switzerland.ORCID 0000-0002-5718-0191
Sanja Ćavar ZeljkovićCentral Laboratories and Research Support, Faculty of Science, Palacký University, Olomouc, Czech Republic.
Urszula PiskurewiczDepartment of Botany and Plant Biology, University of Geneva, Geneva, Switzerland.
Christian MegiesDepartment of Botany and Plant Biology, University of Geneva, Geneva, Switzerland.
Petr TarkowskiCentral Laboratories and Research Support, Faculty of Science, Palacký University, Olomouc, Czech Republic.ORCID 0000-0002-7581-7686
Luis Lopez-MolinaDepartment of Botany and Plant Biology, University of Geneva, Geneva, Switzerland.ORCID 0000-0003-0463-1187
University of Geneva · CHCzech Agrifood Research Center · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Red light promotes germination after activating phytochrome phyB, which destabilizes the germination repressor PIF1. Early upon seed imbibition, canopy light, unfavorable for photosynthesis, represses germination by stabilizing PIF1 after inactivating phyB. Paradoxically, later upon imbibition, canopy light stimulates germination after activating phytochrome phyA. phyA-mediated germination is poorly understood and, intriguingly, is inefficient, compared to phyB-mediated germination, raising the question of its physiological significance. A genetic screen identified polyamine uptake transporter 2 (put2) mutants that overaccumulate polyamines, a class of antioxidant polycations implicated in numerous cellular functions, which we found promote phyA-mediated germination. In WT seeds, our data suggest that canopy light represses polyamines accumulation through PIF1 while red light promotes polyamines accumulation. We show that canopy light also downregulates PIF1 levels, through phyA; however, PIF1 reaccumulates rapidly, which limits phyA-mediated germination. High polyamines levels in decaying seeds bypass PIF1 repression of germination and stimulate phyA-mediated germination, suggesting an adaptive mechanism promoting survival when viability is compromised.

Indexed as

1-Pyrroline-5-Carboxylate DehydrogenaseAmino Acid Transport SystemsArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsDown-RegulationGerminationLightMutationPhytochrome APolyaminesSaccharomyces cerevisiae Proteins1-Pyrroline-5-Carboxylate DehydrogenaseAmino Acid Transport SystemsArabidopsis ProteinsAt2g20180 protein, ArabidopsisBasic Helix-Loop-Helix ProteinsPhytochrome APolyaminesPUT2 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID31339933
PMCPMC6682160
OpenAlexW2963344647

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.