Evidence map›Paper›PMID 31337866›Full record

ArticleOncogene2019

Rare, functional, somatic variants in gene families linked to cancer genes: GPCR signaling as a paradigm.

Francesco Raimondi, Asuka Inoue, Francois M N Kadji, Ni Shuai, Juan-Carlos Gonzalez, Gurdeep Singh, Alicia Alonso de la Vega, Rocio Sotillo, Bernd Fischer, Junken Aoki and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Oncogene, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. The landscape of cancer rewired GPCR signaling axes.bioRxiv : the preprint server for biology · 2023
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Recurrent high-impact mutations at cognate structural positions in class A G protein-coupled receptors expressed in tumors.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  18. GPharmacological reviews · 2021
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Francesco RaimondiBioQuant, Heidelberg University, Im Neuenheimer Feld 267, 69120, Heidelberg, Germany. francesco.raimondi@bioquant.uni-heidelberg.de.
Asuka InoueGraduate School of Pharmaceutical Science, Tohoku University, Sendai, 980-8578, Miyagi, Japan.
Francois M N KadjiGraduate School of Pharmaceutical Science, Tohoku University, Sendai, 980-8578, Miyagi, Japan.
Ni ShuaiComputational Genome Biology, German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.
Juan-Carlos GonzalezBioQuant, Heidelberg University, Im Neuenheimer Feld 267, 69120, Heidelberg, Germany.
Gurdeep SinghBioQuant, Heidelberg University, Im Neuenheimer Feld 267, 69120, Heidelberg, Germany.
Alicia Alonso de la VegaDivision of Molecular Thoracic Oncology, German Cancer Research Center (DKFZ), Translational Lung Research Center (TLRC), Member of the German Center for Lung Research (DZL), 69120, Heidelberg, Germany.
Rocio SotilloDivision of Molecular Thoracic Oncology, German Cancer Research Center (DKFZ), Translational Lung Research Center (TLRC), Member of the German Center for Lung Research (DZL), 69120, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-0855-7917
Bernd FischerComputational Genome Biology, German Cancer Research Center (DKFZ), 69120, Heidelberg, Germany.
Junken AokiGraduate School of Pharmaceutical Science, Tohoku University, Sendai, 980-8578, Miyagi, Japan.
J Silvio GutkindMoores Cancer Center, University of San Diego, San Diego, La Jolla, CA 92093, USA.
Robert B RussellBioQuant, Heidelberg University, Im Neuenheimer Feld 267, 69120, Heidelberg, Germany. robert.russell@bioquant.uni-heidelberg.de.ORCID http://orcid.org/0000-0002-1905-4717
German Cancer Research Center · DEHeidelberg University · DETohoku University · JPUniversity of San Diego · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oncodriver genes are usually identified when mutations recur in multiple tumours. Different drivers often converge in the activation or repression of key cancer-relevant pathways. However, as many pathways contain multiple members of the same gene family, individual mutations might be overlooked, as each family member would necessarily have a lower mutation frequency and thus not identified as significant in any one-gene-at-a-time analysis. Here, we looked for mutated, functional sequence positions in gene families that were mutually exclusive (in patients) with another gene in the same pathway, which identified both known and new candidate oncodrivers. For instance, many inactivating mutations in multiple G-protein (particularly G

Indexed as

MutationChromograninsComputational BiologyEpistasis, GeneticGene FrequencyGene Regulatory NetworksGenes, Tumor SuppressorGTP-Binding Protein alpha Subunits, GsHEK293 CellsHumansModels, MolecularMultigene FamilyNeoplasmsOncogenesReceptors, G-Protein-CoupledSignal TransductionChromograninsGNAS protein, humanGTP-Binding Protein alpha Subunits, GsReceptors, G-Protein-CoupledTranscription Factors

Identifiers

PMID31337866
PMCPMC6756116
OpenAlexW2962854624

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.