Evidence map›Paper›PMID 31337835›Full record

ArticleScientific reports2019

Comparative structural and evolutionary analyses predict functional sites in the artemisinin resistance malaria protein K13.

Romain Coppée, Daniel C Jeffares, Maria A Miteva, Audrey Sabbagh, Jérôme Clain

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Ubiquitin-proteasome system inFrontiers in medicine · 2024
    Pooled it
  2. Pooled it
  3. Review
  4. Stabilizing Plasmodium falciparum proteins for small molecule drug discovery.Protein science : a publication of the Protein Society · 2026
    Article
  5. Article
  6. NovelAntimicrobial agents and chemotherapy · 2025
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Structural Modelling Prediction of RecombinantPathogens (Basel, Switzerland) · 2022
    Article
  18. Pathogens (Basel, Switzerland) · 2022
    Article
  19. Article
  20. Plasmodium falciparum resistance to ACTs: Emergence, mechanisms, and outlook.International journal for parasitology. Drugs and drug resistance · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Romain CoppéeUniversité de Paris, UMR 261 MERIT, IRD, F-75006 Paris, France.
Daniel C JeffaresDepartment of Biology and York Biomedical Research Institute, University of York, Wentworth Way, York, YO10 5DD, UK.
Maria A MitevaUniversité de Paris, Inserm U1268 MCTR, CiTCom UMR 8038 CNRS, Paris, France.
Audrey SabbaghUniversité de Paris, UMR 261 MERIT, IRD, F-75006 Paris, France. audrey.sabbagh@parisdescartes.fr.
Jérôme ClainUniversité de Paris, UMR 261 MERIT, IRD, F-75006 Paris, France. jerome.clain@parisdescartes.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Numerous mutations in the Plasmodium falciparum Kelch13 (K13) protein confer resistance to artemisinin derivatives, the current front-line antimalarial drugs. K13 is an essential protein that contains BTB and Kelch-repeat propeller (KREP) domains usually found in E3 ubiquitin ligase complexes that target substrate protein(s) for ubiquitin-dependent degradation. K13 is thought to bind substrate proteins, but its functional/interaction sites and the structural alterations associated with artemisinin resistance mutations remain unknown. Here, we screened for the most evolutionarily conserved sites in the protein structure of K13 as indicators of structural and/or functional constraints. We inferred structure-dependent substitution rates at each amino acid site of the highly conserved K13 protein during the evolution of Apicomplexa parasites. We found two solvent-exposed patches of extraordinarily conserved sites likely involved in protein-protein interactions, one in BTB and the other one in KREP. The conserved patch in K13 KREP overlaps with a shallow pocket that displays a differential electrostatic surface potential, relative to neighboring sites, and that is rich in serine and arginine residues. Comparative structural and evolutionary analyses revealed that these properties were also found in the functionally-validated shallow pocket of other KREPs including that of the cancer-related KEAP1 protein. Finally, molecular dynamics simulations carried out on PfK13 R539T and C580Y artemisinin resistance mutant structures revealed some local structural destabilization of KREP but not in its shallow pocket. These findings open new avenues of research on one of the most enigmatic malaria proteins with the utmost clinical importance.

Indexed as

AntimalarialsArtemisininsDrug ResistanceEvolution, MolecularMalaria, FalciparumMolecular Dynamics SimulationPlasmodium falciparumProtozoan ProteinsAntimalarialsArtemisininsProtozoan Proteins

Identifiers

PMID31337835
PMCPMC6650413

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.