Evidence map›Paper›PMID 31337712›Full record

ArticlePlant physiology2019

Isolation of Open Chromatin Identifies Regulators of Systemic Acquired Resistance.

Stephani Baum, Eva-Maria Reimer-Michalski, Anthony Bolger, Andrea J Mantai, Vladimir Benes, Björn Usadel, Uwe Conrath

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
6.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. RNA-binding proteins orchestrating immunity in plants.The Plant journal : for cell and molecular biology · 2025
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. TheFrontiers in plant science · 2023
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Stephani BaumDepartment of Plant Physiology, Rheinisch-Westfälische Technische Hochschule Aachen University, Aachen 52056, Germany.
Eva-Maria Reimer-MichalskiDepartment of Plant Physiology, Rheinisch-Westfälische Technische Hochschule Aachen University, Aachen 52056, Germany.ORCID 0000-0002-1203-2988
Anthony BolgerDepartment of Botany, Rheinisch-Westfälische Technische Hochschule Aachen University, Aachen 52056, Germany.
Andrea J MantaiDepartment of Plant Physiology, Rheinisch-Westfälische Technische Hochschule Aachen University, Aachen 52056, Germany.ORCID 0000-0002-0225-5248
Vladimir BenesGenomics Core Facility, European Molecular Biology Laboratory, Heidelberg 69117, Germany.ORCID 0000-0002-0352-2547
Björn UsadelDepartment of Botany, Rheinisch-Westfälische Technische Hochschule Aachen University, Aachen 52056, Germany.ORCID 0000-0003-0921-8041
Uwe ConrathDepartment of Plant Physiology, Rheinisch-Westfälische Technische Hochschule Aachen University, Aachen 52056, Germany uwe.conrath@bio3.rwth-aachen.de.ORCID 0000-0002-8503-1943
RWTH Aachen University · DEEuropean Molecular Biology Laboratory · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Upon local infection, plants activate a systemic immune response called systemic acquired resistance (SAR). During SAR, systemic leaves become primed for the superinduction of defense genes upon reinfection. We used formaldehyde-assisted isolation of regulatory DNA elements coupled to next-generation sequencing to identify SAR regulators. Our bioinformatic analysis produced 10,129 priming-associated open chromatin sites in the 5' region of 3,025 genes in the systemic leaves of Arabidopsis (

Indexed as

Plant ImmunityArabidopsisArabidopsis ProteinsCalmodulin-Binding ProteinsPseudomonas syringaeRegulatory Elements, TranscriptionalArabidopsis ProteinsAT3G45290 protein, ArabidopsisCalmodulin-Binding Proteins

Identifiers

PMID31337712
PMCPMC6776868
OpenAlexW2962967836

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.