Evidence map›Paper›PMID 31337442›Full record

ArticleParasites & vectors2019

DNA methylation and hydroxymethylation profiles reveal possible role of highly methylated TLR signaling on Fasciola gigantica excretory/secretory products (FgESPs) modulation of buffalo dendritic cells.

Xue-Fang Mei, Wei Shi, Yao-Yao Zhang, Bin Zhu, Yu-Rui Wang, Lin-Jing Hou, Wen-Ping Zhao, Jian Li, Dong-Ying Wang, Hong-Lin Luo and 1 more

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 10 citations in OpenAlex.

  1. Frontiers in cellular and infection microbiology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Xue-Fang MeiSchool of Animal Science and Technology, Guangxi University, Nanning, People's Republic of China.
Wei ShiSchool of Preclinical Medicine, Guangxi Medical University, Nanning, People's Republic of China.
Yao-Yao ZhangSchool of Animal Science and Technology, Guangxi University, Nanning, People's Republic of China.
Bin ZhuSchool of Animal Science and Technology, Guangxi University, Nanning, People's Republic of China.
Yu-Rui WangSchool of Animal Science and Technology, Guangxi University, Nanning, People's Republic of China.
Lin-Jing HouSchool of Animal Science and Technology, Guangxi University, Nanning, People's Republic of China.
Wen-Ping ZhaoSchool of Animal Science and Technology, Guangxi University, Nanning, People's Republic of China.
Jian LiState Key Laboratory of Genetic Engineering, Ministry of Education Key Laboratory of Contemporary Anthropology, Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Fudan University, Shanghai, People's Republic of China.
Dong-Ying WangSchool of Animal Science and Technology, Guangxi University, Nanning, People's Republic of China. dywang@gxu.edu.cn.
Hong-Lin LuoGuangxi Key Laboratory for Aquatic Genetic Breeding and Healthy Aquaculture, Guangxi Institute of Fishery Sciences, Nanning, People's Republic of China. 541365548@qq.com.
Wei-Yi HuangSchool of Animal Science and Technology, Guangxi University, Nanning, People's Republic of China. wyhuang@gxu.edu.cn.
Guangxi University · CNGuangxi Academy of Fishery Sciences · CNGuangxi Medical University · CNState Key Laboratory of Genetic Engineering

Funding

National Natural Science Foundation of China 31560679
6 · The paper itself

Abstract

backgroundExcretory/secretory products (ESPs) released by parasites influence the development and functions of host dendritic cells (DCs). However, little is known about changes of DNA (hydroxy)methylation on DC development during Fasciola gigantica infection. The present study aimed to investigate whether F. gigantica ESPs (FgESPs) affects the development and functions of buffalo DCs through altering the DNA (hydroxy)methylation of DCs.

methodsBuffalo DCs were prepared from peripheral blood mononuclear cells (PBMCs) and characterized using scanning and transmission electron microscopy (SEM/TEM) and quantitative reverse transcriptional PCR (qRT-RCR). DCs were treated with 200 μg/ml of FgESPs in vitro, following DNA extraction. The DNA methylome and hydroxymethylome were profiled based on (hydroxy)methylated DNA immunoprecipitation sequencing [(h)MeDIP-Seq] and bioinformatics analyses. qRT-RCR was also performed to assess the gene transcription levels of interest.

resultsFgESPs markedly suppressed DC maturation evidenced by morphological changes and downregulated gene expression of CD1a and MHC II. Totals of 5432 and 360 genes with significant changes in the 5-methylcytosine (5-mC) and the 5-hydroxymethylcytosine (5-hmC) levels, respectively, were identified in buffalo DCs in response to FgESPs challenge. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis revealed that these differentially expressed genes were highly enriched in pathways associated with immune response. Some cancer-related pathways were also indicated. There were 111 genes demonstrating changes in both 5-mC and 5-hmC levels, 12 of which were interconnected and enriched in 12 pathways. The transcription of hypermethylated genes TLR2, TLR4 and IL-12B were downregulated or in a decreasing trend, while the mRNA level of high-hydroxymethylated TNF gene was upregulated in buffalo DCs post-exposure to FgESPs in vitro.

conclusionsTo our knowledge, the present study provides for the first time a unique genome-wide profile of DNA (hydroxy)methylation for DCs that interact with FgESPs, and suggests a possible mechanism of FgESPs in suppressing DC maturation and functions that are involved in TLR signaling.

Indexed as

DNA MethylationSignal TransductionAnimalsBuffaloesDendritic CellsDown-RegulationFasciolaFascioliasisFemaleGene Expression ProfilingHost-Parasite InteractionsReal-Time Polymerase Chain ReactionRNA, MessengerSequence Analysis, DNATissue ExtractsToll-Like ReceptorsRNA, MessengerTissue ExtractsToll-Like ReceptorsDendritic cellsExcretory/secretory productsFasciola gigantica(h)MeDIP-Seq(hydroxy)methylation

Identifiers

PMID31337442
PMCPMC6647289
OpenAlexW2967595990

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.