Evidence map›Paper›PMID 31335892›Full record

ArticlePloS one2019

A comparison of Lyse-It to other cellular sample preparation, bacterial lysing, and DNA fragmentation technologies.

Tonya M Santaus, Shan Li, Lahari Saha, Wilbur H Chen, Siya Bhagat, O Colin Stine, Chris D Geddes

Abstract readComparative Study
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tonya M SantausChemistry and Biochemistry Department, University of Maryland, Baltimore County, Baltimore, MD, United States of America.ORCID 0000-0002-8643-2343
Shan LiEpidemiology and Public Health Department, University of Maryland School of Medicine, Baltimore, MD, United States of America.
Lahari SahaChemistry and Biochemistry Department, University of Maryland, Baltimore County, Baltimore, MD, United States of America.
Wilbur H ChenCenter for Vaccine Development and Global Health, University of Maryland School of Medicine, Baltimore, MD, United States of America.
Siya BhagatChemistry and Biochemistry Department, University of Maryland, Baltimore County, Baltimore, MD, United States of America.
O Colin StineEpidemiology and Public Health Department, University of Maryland School of Medicine, Baltimore, MD, United States of America.
Chris D GeddesChemistry and Biochemistry Department, University of Maryland, Baltimore County, Baltimore, MD, United States of America.ORCID 0000-0002-9110-6374

Funding

Graduate Training at The Chemistry Biology InterfaceT32GM066706 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI SELEY-RADTKE, KATHERINE L, SMITH, AARON T · 2004 to 2023
$3.3M
NIGMS NIH HHS T32 GM066706
6 · The paper itself

Abstract

The ability for safe and rapid pathogenic sample transportation and subsequent detection is an increasing challenge throughout the world. Herein, we describe and use bead-beating, vortex, sonication, 903 protein saver cards, and Lyse-It methods, aiming to inactivate Gram-positive and -negative bacteria with subsequent genome DNA (quantitative Polymerase Chain Reaction) qPCR detection. The basic concepts behind the four chosen technologies is their versatility, cost, and ease of use in developed and underdeveloped countries. The four methods target the testing of bacterial resilience, cellular extraction from general and complex media and subsequent DNA extraction for qPCR detection and amplification. These results demonstrate that conventional high temperature heating, 903 protein saver cards, and Lyse-It are all viable options for inactivating bacterial growth for safe shipping. Additionally, Lyse-It was found to be particularly useful as this technology can inactivate bacteria, extract cells from 903 protein saver cards, lyse bacterial cells, and additionally keep genomic DNA viable for qPCR detection.

Indexed as

Cell FractionationDNA, BacterialGram-Negative BacteriaGram-Positive BacteriaMolecular Diagnostic TechniquesPolymerase Chain ReactionReagent Kits, DiagnosticDNA, BacterialReagent Kits, Diagnostic

Identifiers

PMID31335892
PMCPMC6650070

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.