ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2019
Phased genome sequence of an interspecific hybrid flowering cherry, 'Somei-Yoshino' (Cerasus × yedoensis).
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.
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Who cites it
39 citing papers in PubMed.
- Pangenome and resequencing analyses reveal flowering evolution and genetic control in Cerasus.Nature communications · 2026Article
- A hierarchical abscission program regulates reproductive allocation inHorticulture research · 2026Article
- Chromosome-scale genomes of two wild flowering cherries (Cerasus itosakura and Cerasus jamasakura) provide insights into structural evolution in Cerasus.DNA research : an international journal for rapid publication of reports on genes and genomes · 2025Article
- Identification of Self-Incompatibility Related Genes in Sweet Cherry Based on Transcriptomic Analysis.Biology · 2025Article
- Advancing ornamental plant breeding through genomic technologies: opportunities, challenges, and future directions.Functional & integrative genomics · 2025Review
- Exploring intra- and intergenomic variation in haplotype-resolved pangenomes.Plant biotechnology journal · 2025Article
- A Near Complete Genome Assembly of the Oshima Cherry Cerasus speciosa.Scientific data · 2025Article
- Population sequencing of cherry accessions unravels the evolution of Cerasus species and the selection of genetic characteristics in edible cherries.Molecular horticulture · 2025Article
- The telomere-to-telomere genome of flowering cherry (Prunus campanulata) reveals genomic evolution of the subgenus Cerasus.GigaScience · 2025Article
- Propagation path of a flowering cherry (Cerasus × yedoensis) cultivar 'Somei-Yoshino' traced by somatic mutations.DNA research : an international journal for rapid publication of reports on genes and genomes · 2024Article
- Haplotype-resolved genome assembly for tetraploid Chinese cherry (Horticulture research · 2024Article
- Chromosome-level genome assembly provides insights into the genetic diversity, evolution, and flower development of Prunus conradinae.Molecular horticulture · 2024Article
- A chromosome-scale assembly of the early-flowering Prunus campanulata and comparative genomics of cherries.Scientific data · 2023Article
- A review of plant epigenetics through the lens of almond.The plant genome · 2023Review
- Recent Advances in Assembly of Complex Plant Genomes.Genomics, proteomics & bioinformatics · 2023Review
- Haplotype resolved chromosome level genome assembly ofHorticulture research · 2023Article
- The structure of the tetraploid sour cherry 'Schattenmorelle' (Frontiers in plant science · 2023Article
- Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids.GigaScience · 2022Article
- Accurate Chromosome Identification in the Prunus SubgenusInternational journal of molecular sciences · 2022Article
- Genome-Wide Analysis of theInternational journal of molecular sciences · 2022Article
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8 authors.
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No grant is acknowledged in the PubMed record.
Abstract
We report the phased genome sequence of an interspecific hybrid, the flowering cherry 'Somei-Yoshino' (Cerasus × yedoensis). The sequence data were obtained by single-molecule real-time sequencing technology, split into two subsets based on genome information of the two probable ancestors, and assembled to obtain two haplotype phased genome sequences of the interspecific hybrid. The resultant genome assembly consisting of the two haplotype sequences spanned 690.1 Mb with 4,552 contigs and an N50 length of 1.0 Mb. We predicted 95,076 high-confidence genes, including 94.9% of the core eukaryotic genes. Based on a high-density genetic map, we established a pair of eight pseudomolecule sequences, with highly conserved structures between the two haplotype sequences with 2.4 million sequence variants. A whole genome resequencing analysis of flowering cherries suggested that 'Somei-Yoshino' might be derived from a cross between C. spachiana and either C. speciosa or its relatives. A time-course transcriptome analysis of floral buds and flowers suggested comprehensive changes in gene expression in floral bud development towards flowering. These genome and transcriptome data are expected to provide insights into the evolution and cultivation of flowering cherry and the molecular mechanism underlying flowering.
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