Evidence map›Paper›PMID 31334757›Full record

ArticleBrain : a journal of neurology2019

Cohesin complex-associated holoprosencephaly.

Paul Kruszka, Seth I Berger, Valentina Casa, Mike R Dekker, Jenna Gaesser, Karin Weiss, Ariel F Martinez, David R Murdock, Raymond J Louie, Eloise J Prijoles and 25 more

Open access · bronzeAbstract read
In one paragraph

Article in Brain : a journal of neurology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 62 citations in OpenAlex.

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  18. Gene-alcohol interactions in birth defects.Current topics in developmental biology · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

35 authors at 16 institutions in 6 countries.

Paul KruszkaMedical Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Seth I BergerMedical Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Valentina CasaDepartment of Cell Biology, Erasmus MC, Rotterdam, The Netherlands.
Mike R DekkerDepartment of Cell Biology, Erasmus MC, Rotterdam, The Netherlands.
Jenna GaesserDepartment of Pediatrics, Division of Neurology, University of Pittsburgh, Pittsburgh, PA, USA.
Karin WeissMedical Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Ariel F MartinezMedical Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
David R MurdockMedical Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Raymond J LouieGreenwood Genetic Center, JC Self Research Institute of Human Genetics, Greenwood, SC, USA.
Eloise J PrijolesGreenwood Genetic Center, JC Self Research Institute of Human Genetics, Greenwood, SC, USA.
Angie W LichtyGreenwood Genetic Center, JC Self Research Institute of Human Genetics, Greenwood, SC, USA.
Oebele F BrouwerDepartment of Neurology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Evelien Zonneveld-HuijssoonDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Mark J StephanDepartment of Pediatrics, University of Washington, Seattle, WA, USA.
Jacob HogueDivision of Clinical Genetics, Department of Pediatrics, Madigan Army Hospital, Tacoma, WA, USA.
Ping HuMedical Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Momoko Tanima-NagaiMedical Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Joshua L EversonDepartment of Comparative Biosciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, USA.
Chitra PrasadChildren's Health Research Institute, London, ON, Canada.
Anna CeredaDepartment of Pediatrics, ASST Papa Giovanni XXIII, Bergamo, Italy.
Maria IasconeLaboratorio di Genetica Medica, ASST Papa Giovanni XXIII, Bergamo, Italy.
Allison SchreiberGenomic Medicine Institute, Cleveland Clinic, Cleveland, OH, USA.
Vickie ZurcherGenomic Medicine Institute, Cleveland Clinic, Cleveland, OH, USA.
Nicole Corsten-JanssenDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Luis EscobarPeyton Manning Children's Hospital at St. Vincent, Medical Genetics and Neurodevelopment Center, Indianapolis, IN, USA.
Nancy J CleggTexas Scottish Rite Hospital for Children, Dallas, TX, USA.
Mauricio R DelgadoTexas Scottish Rite Hospital for Children, Dallas, TX, USA.
Omkar HajirnisPediatric Neurology, Synapses Child Neurology and Development Centre, Thane, Maharashtra, India.
Meena BalasubramanianSheffield Clinical Genetics Service, Sheffield Children's, NHS Foundation Trust, Sheffield, UK.
Hülya KayseriliMedical Genetics, Medical Faculty, Koç University, Istanbul, Turkey.
Matthew DeardorffThe Division of Genetics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Raymond A PootDepartment of Cell Biology, Erasmus MC, Rotterdam, The Netherlands.
Kerstin S WendtDepartment of Cell Biology, Erasmus MC, Rotterdam, The Netherlands.
Robert J LipinskiDepartment of Comparative Biosciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, USA.
Maximilian MuenkeMedical Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
National Institutes of Health · USErasmus MC · NLGreenwood Genetic Center · USUniversity Medical Center Groningen · NLCleveland Clinic · USOspedale Papa Giovanni XXIII · ITTexas Scottish Rite Hospital for Children · USUniversity of Wisconsin–Madison · USChildren’s Health Research Institute · CAChildren's Hospital of Philadelphia · USKoç University · TRMadigan Army Medical Center · USPeyton Manning Children’s Hospital at St.Vincent · USSheffield Children's NHS Foundation Trust · GBUniversity of Pittsburgh · USUniversity of Washington · US

Funding

Genetics of Brain DevelopmentZIAHG000209 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI KRUSZKA, PAUL · 2009 to 2020
$18.2M
Molecular & Environmental Toxicology Pre-& Postdoctoral Training ProgramT32ES007015 · NIEHS · UNIVERSITY OF WISCONSIN-MADISON · PI CHRISTOPHER A BRADFIELD · 1985 to 2026
$11.5M
Developmental toxicity of pesticide synergist/Hedgehog inhibitor PBOR01ES026819 · NIEHS · UNIVERSITY OF WISCONSIN-MADISON · PI LIPINSKI, ROBERT · 2018 to 2022
$1.8M
Doris Duke Charitable Foundation 2012059NIEHS NIH HHS R01 ES026819NIEHS NIH HHS T32 ES007015Wellcome Trust
6 · The paper itself

Abstract

Marked by incomplete division of the embryonic forebrain, holoprosencephaly is one of the most common human developmental disorders. Despite decades of phenotype-driven research, 80-90% of aneuploidy-negative holoprosencephaly individuals with a probable genetic aetiology do not have a genetic diagnosis. Here we report holoprosencephaly associated with variants in the two X-linked cohesin complex genes, STAG2 and SMC1A, with loss-of-function variants in 10 individuals and a missense variant in one. Additionally, we report four individuals with variants in the cohesin complex genes that are not X-linked, SMC3 and RAD21. Using whole mount in situ hybridization, we show that STAG2 and SMC1A are expressed in the prosencephalic neural folds during primary neurulation in the mouse, consistent with forebrain morphogenesis and holoprosencephaly pathogenesis. Finally, we found that shRNA knockdown of STAG2 and SMC1A causes aberrant expression of HPE-associated genes ZIC2, GLI2, SMAD3 and FGFR1 in human neural stem cells. These findings show the cohesin complex as an important regulator of median forebrain development and X-linked inheritance patterns in holoprosencephaly.

Indexed as

AdolescentAnimalsCell Cycle ProteinsChildChild, PreschoolChromosomal Proteins, Non-HistoneCohesinsFemaleHoloprosencephalyHumansInfantInfant, NewbornMaleMiceMice, Inbred C57BLStructural Maintenance of Chromosome Protein 1Cell Cycle ProteinsChromosomal Proteins, Non-HistoneCohesinsSTAG2 protein, humanStructural Maintenance of Chromosome Protein 1cohesin complexforebrain divisionholoprosencephalyX-linked inheritance

Identifiers

PMID31334757
PMCPMC7245359
OpenAlexW2963296758

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.