Evidence map›Paper›PMID 31332980›Full record

ArticleAllergy, asthma & immunology research2019

In-Depth, Proteomic Analysis of Nasal Secretions from Patients With Chronic Rhinosinusitis and Nasal Polyps.

Yi Sook Kim, Dohyun Han, JinYoup Kim, Dae Woo Kim, Yong Min Kim, Ji Hun Mo, Hyo Geun Choi, Jong Wan Park, Hyun Woo Shin

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Allergy, asthma & immunology research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Gut Microbiome Proteomics in Food Allergies.International journal of molecular sciences · 2023
    Review
  9. Review
  10. Current Insights on the Impact of Proteomics in Respiratory Allergies.International journal of molecular sciences · 2022
    Review
  11. [Application of proteomics in allergic rhinitis].Lin chuang er bi yan hou tou jing wai ke za zhi = Journal of clinical otorhinolaryngology head and neck surgery · 2022
    Review
  12. Article
  13. Rethinking neutrophils and eosinophils in chronic rhinosinusitis.The Journal of allergy and clinical immunology · 2021
    Review
  14. Article
  15. Article
  16. Article
  17. Expression of Iron-Regulatory Hormone Hepcidin and Iron Transporters Ferroportin and ZIP8 in Patients With and Without Chronic Rhinosinusitis.Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery · 2020
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 4 countries.

Yi Sook Kim *Obstructive Upper airway Research (OUaR) Laboratory, Department of Pharmacology, Seoul National University College of Medicine, Seoul, Korea.ORCID https://orcid.org/0000-0002-6208-6212
Dohyun Han *Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital, Seoul, Korea.ORCID https://orcid.org/0000-0002-0841-1598
JinYoup KimDepartment of Otorhinolaryngology, Armed Forces Capital Hospital, Seongnam, Korea.
Dae Woo KimDepartment of Otorhinolaryngology-Head and Neck Surgery, Boramae Medical Center, Seoul, Korea.ORCID https://orcid.org/0000-0001-5166-3072
Yong Min KimDepartment of Otorhinolaryngology-Head and Neck Surgery, Chungnam National University Hospital, Daejeon, Korea.
Ji Hun MoDepartment of Otorhinolaryngology-Head and Neck Surgery, Dankook University Hospital, Cheonan, Korea.ORCID https://orcid.org/0000-0003-1331-364X
Hyo Geun ChoiDepartment of Otorhinolaryngology-Head and Neck Surgery, Hallym University Hospital, Pyongchon, Korea.ORCID https://orcid.org/0000-0003-1655-9549
Jong Wan ParkObstructive Upper airway Research (OUaR) Laboratory, Department of Pharmacology, Seoul National University College of Medicine, Seoul, Korea.ORCID https://orcid.org/0000-0003-4676-5191
Hyun Woo ShinObstructive Upper airway Research (OUaR) Laboratory, Department of Pharmacology, Seoul National University College of Medicine, Seoul, Korea.ORCID https://orcid.org/0000-0002-4038-9992
Seoul National University · KRArmed Forces Capital Hospital · KRHallym University · KRSeoul National University Hospital · KRSNUH SMG-SNU Boramae Medical Center · KRSociety for Mucosal Immunology · US

Funding

Korea Health Industry Development Institute HI17C1669
6 · The paper itself

Abstract

purposeChronic rhinosinusitis (CRS) is a complex immunological condition, and novel experimental modalities are required to explore various clinical and pathophysiological endotypes; mere evaluation of nasal polyp (NP) status is inadequate. Therefore, we collected patient nasal secretions on filter paper and characterized the proteomes.

methodsWe performed liquid chromatography-mass spectrometry (MS)/MS in the data-dependent acquisition (DDA) and data-independent acquisition (DIA) modes. Nasal secretions were collected from 10 controls, 10 CRS without NPs (CRSsNP) and 10 CRS with NPs (CRSwNP). We performed Orbitrap MS-based proteomic analysis in the DDA (5 controls, 5 CRSsNP and 5 CRSwNP) and the DIA (5 controls, 5 CRSsNP and 5 CRSwNP) modes, followed by a statistical analysis and a hierarchical clustering to identify differentially expressed proteins in the 3 groups.

resultsWe identified 2,020 proteins in nasal secretions. Canonical pathway analysis and gene ontology (GO) evaluation revealed that interleukin (IL)-7, IL-9, IL-17A and IL-22 signaling and neutrophil-mediated immune responses like neutrophil degranulation and activation were significantly increased in CRSwNP compared to control. The GO terms related to the iron ion metabolism that may be associated with CRS and NP development.

conclusionsCollection of nasal secretions on the filter paper is a practical and non-invasive method for in-depth study of nasal proteomics. Our proteomic signatures also support that Asian NPs could be characterized as non-eosinophilic inflammation features. Therefore, the proteomic profiling of nasal secretions from CRS patients may enhance our understanding of CRS endotypes.

Indexed as

nasal polypsproteomicsSinusitis

Identifiers

PMID31332980
PMCPMC6658407
OpenAlexW2964261376

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.