Evidence map›Paper›PMID 31332264›Full record

ArticleScientific reports2019

Vps10-mediated targeting of Pep4 determines the activity of the vacuole in a substrate-dependent manner.

Fahd Boutouja, Christian M Stiehm, Thomas Mastalski, Rebecca Brinkmeier, Christina Reidick, Fouzi El Magraoui, Harald W Platta

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Comparative Transcriptome Analysis Unravels the Response Mechanisms ofInternational journal of molecular sciences · 2022
    Article
  7. Article
  8. The Peroxisomal PTS1-Import Defect ofInternational journal of molecular sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Fahd BoutoujaBiochemie Intrazellulärer Transportprozesse, Ruhr-Universität Bochum, 44801, Bochum, Germany.
Christian M StiehmBiochemie Intrazellulärer Transportprozesse, Ruhr-Universität Bochum, 44801, Bochum, Germany.
Thomas MastalskiBiochemie Intrazellulärer Transportprozesse, Ruhr-Universität Bochum, 44801, Bochum, Germany.
Rebecca BrinkmeierBiochemie Intrazellulärer Transportprozesse, Ruhr-Universität Bochum, 44801, Bochum, Germany.
Christina ReidickBiochemie Intrazellulärer Transportprozesse, Ruhr-Universität Bochum, 44801, Bochum, Germany.
Fouzi El MagraouiBiomedizinische Forschung, Leibniz-Institute for Analytical Sciences (ISAS-e.V.), 44139, Dortmund, Germany.
Harald W PlattaBiochemie Intrazellulärer Transportprozesse, Ruhr-Universität Bochum, 44801, Bochum, Germany. harald.platta@rub.de.
Ruhr University Bochum · DELeibniz Institute for Analytical Sciences - ISAS · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The vacuole is the hydrolytic compartment of yeast cells and has a similar function as the lysosome of higher eukaryotes in detoxification and recycling of macromolecules. We analysed the contribution of single vacuolar enzymes to pexophagy and identified the phospholipase Atg15, the V-ATPase factor Vma2 and the serine-protease Prb1 along with the already known aspartyl-protease Pep4 (Proteinase A) to be required for this pathway. We also analysed the trafficking receptor Vps10, which is required for an efficient vacuolar targeting of the precursor form of Pep4. Here we demonstrate a novel context-dependent role of Vps10 in autophagy. We show that reduced maturation of Pep4 in a VPS10-deletion strain affects the proteolytic activity of the vacuole depending on the type and amount of substrate. The VPS10-deletion has no effect on the degradation of the cytosolic protein Pgk1 via bulk autophagy or on the degradation of ribosomes via ribophagy. In contrast, the degradation of an excess of peroxisomes via pexophagy as well as mitochondria via mitophagy was significantly hampered in a VPS10-deletion strain and correlated with a decreased maturation level of Pep4. The results show that Vps10-mediated targeting of Pep4 limits the proteolytic capacity of the vacuole in a substrate-dependent manner.

Indexed as

Aspartic Acid EndopeptidasesAutophagyGene DeletionGenes, FungalMacroautophagyModels, BiologicalPeroxisomesPhosphoglycerate KinaseProteolysisSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSubstrate SpecificityVacuolesVesicular Transport ProteinsAspartic Acid EndopeptidasesPEP1 protein, S cerevisiaePEP4 protein, S cerevisiaePhosphoglycerate KinaseSaccharomyces cerevisiae ProteinsVesicular Transport Proteins

Identifiers

PMID31332264
PMCPMC6646403
OpenAlexW2962842826

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.