ArticleScientific reports2019
Modulation of defence and iron homeostasis genes in rice roots by the diazotrophic endophyte Herbaspirillum seropedicae.
Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 2 of them syntheses that pooled it.
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Who cites it
16 citing papers in PubMed, 2 syntheses or guidelines pooled it, 30 citations in OpenAlex.
- Integrative meta-analysis of RNA-Seq data reveals conserved orthologous gene modules and pathways in wheat and rice in response to plant growth-promoting bacteria.Functional & integrative genomics · 2026Pooled it
- Modulation of plant transcription factors and priming of stress tolerance by plant growth-promoting bacteria: a systematic review.Annals of botany · 2025Pooled it
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- Divergent genetic architecture of cold stress tolerance inFrontiers in plant science · 2025Article
- Fine-Tuning ofPlants (Basel, Switzerland) · 2024Article
- Associative Bacteria and Arbuscular Mycorrhizal Fungus Increase Drought Tolerance in Maize (Plants (Basel, Switzerland) · 2024Article
- Dual RNA-seq of maize andFrontiers in plant science · 2024Article
- Paraburkholderia phytofirmans PsJN colonization of rice endosphere triggers an atypical transcriptomic response compared to rice native Burkholderia s.l. endophytes.Scientific reports · 2023Article
- Article
- The Impact of Non-Nodulating Diazotrophic Bacteria in Agriculture: Understanding the Molecular Mechanisms That Benefit Crops.International journal of molecular sciences · 2022Review
- Common gene expression patterns are observed in rice roots during associations with plant growth-promoting bacteria, Herbaspirillum seropedicae and Azospirillum brasilense.Scientific reports · 2022Article
- Regulation of Tomato Specialised Metabolism after Establishment of Symbiosis with the Endophytic FungusMicroorganisms · 2022Article
- What do we know from the transcriptomic studies investigating the interactions between plants and plant growth-promoting bacteria?Frontiers in plant science · 2022Review
- Functional mutants of Azospirillum brasilense elicit beneficial physiological and metabolic responses in Zea mays contributing to increased host iron assimilation.The ISME journal · 2021Article
- Transcriptomic and Metabolomic Approaches Deepen Our Knowledge of Plant-Endophyte Interactions.Frontiers in plant science · 2021Review
- Monitoring of Rice Transcriptional Responses to Contrasted Colonizing Patterns of PhytobeneficialFrontiers in plant science · 2019Article
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Authors and funding
14 authors at 5 institutions in 4 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Rice is staple food of nearly half the world's population. Rice yields must therefore increase to feed ever larger populations. By colonising rice and other plants, Herbaspirillum spp. stimulate plant growth and productivity. However the molecular factors involved are largely unknown. To further explore this interaction, the transcription profiles of Nipponbare rice roots inoculated with Herbaspirillum seropedicae were determined by RNA-seq. Mapping the 104 million reads against the Oryza sativa cv. Nipponbare genome produced 65 million unique mapped reads that represented 13,840 transcripts each with at least two-times coverage. About 7.4% (1,014) genes were differentially regulated and of these 255 changed expression levels more than two times. Several of the repressed genes encoded proteins related to plant defence (e.g. a putative probenazole inducible protein), plant disease resistance as well as enzymes involved in flavonoid and isoprenoid synthesis. Genes related to the synthesis and efflux of phytosiderophores (PS) and transport of PS-iron complexes were induced by the bacteria. These data suggest that the bacterium represses the rice defence system while concomitantly activating iron uptake. Transcripts of H. seropedicae were also detected amongst which transcripts of genes involved in nitrogen fixation, cell motility and cell wall synthesis were the most expressed.
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