Evidence map›Paper›PMID 31331294›Full record

ArticleBMC cancer2019

Analysis of the pathogenic variants of BRCA1 and BRCA2 using next-generation sequencing in women with familial breast cancer: a case-control study.

Omar Alejandro Zayas-Villanueva, Luis Daniel Campos-Acevedo, José de Jesús Lugo-Trampe, David Hernández-Barajas, Juan Francisco González-Guerrero, María Fernanda Noriega-Iriondo, Ilse Alejandra Ramírez-Sánchez, Laura Elia Martínez-de-Villarreal

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Omar Alejandro Zayas-VillanuevaDepartment of Medical Oncology, Hospital Universitario "José E. González", Monterrey, Mexico.
Luis Daniel Campos-AcevedoDepartment of Genetics, Hospital Universitario "José E. González", Monterrey, Mexico.
José de Jesús Lugo-TrampeDepartment of Genetics, Hospital Universitario "José E. González", Monterrey, Mexico.
David Hernández-BarajasDepartment of Medical Oncology, Hospital Universitario "José E. González", Monterrey, Mexico.
Juan Francisco González-GuerreroDepartment of Medical Oncology, Hospital Universitario "José E. González", Monterrey, Mexico.
María Fernanda Noriega-IriondoDepartment of Medical Oncology, Hospital Universitario "José E. González", Monterrey, Mexico.
Ilse Alejandra Ramírez-SánchezDepartment of Genetics, Hospital Universitario "José E. González", Monterrey, Mexico.
Laura Elia Martínez-de-VillarrealDepartment of Genetics, Hospital Universitario "José E. González", Monterrey, Mexico. laelmar@yahoo.com.mx.ORCID http://orcid.org/0000-0003-1442-9089
Hospital Universitario Dr José Eleuterio Gonzalez · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPathogenic variants (PVs) of BRCA genes entail a lifetime risk of developing breast cancer in 50-85% of carriers. Their prevalence in different populations has been previously reported. However, there is scarce information regarding the most common PVs of these genes in Latin-Americans. This study identified BRCA1 and BRCA2 PV frequency in a high-risk female population from Northeastern Mexico and determined the association of these mutations with the patients' clinical and pathological characteristics.

methodsWomen were divided into three groups: aged ≤ 40 years at diagnosis and/or risk factors for hereditary breast cancer (n = 101), aged > 50 years with sporadic breast cancer (n = 22), and healthy women (n = 72). Their DNA was obtained from peripheral blood samples and the variants were examined by next-generation sequencing with Ion AmpliSeq BRCA1 and BRCA2 Panel using next-generation sequencing.

resultsPVs were detected in 13.8% group 1 patients (BRCA1, 12 patients; BRCA2, 2 patients). Only two patients in group 2 and none in group 3 exhibited BRCA1 PVs. Variants of uncertain significance were reported in 15.8% patients (n = 16). In group 1, patients with the triple-negative subtype, PV frequency was 40% (12/30). Breast cancer prevalence in young women examined in this study was higher than that reported by the National Cancer Institute Surveillance, Epidemiology (15.5% vs. 5.5%, respectively).

conclusionsThe detected BRCA1 and BRCA2 PV frequency was similar to that reported in other populations. Our results indicate that clinical data should be evaluated before genetic testing and highly recommend genetic testing in patients with the triple-negative subtype and other clinical aspects.

Indexed as

Genes, BRCA1Genes, BRCA2Genetic TestingAdultBRCA1 ProteinBRCA2 ProteinBreast NeoplasmsCase-Control StudiesExonsFemaleGenetic LociGerm-Line MutationHigh-Throughput Nucleotide SequencingHumansMexicoMiddle AgedBRCA1 ProteinBRCA1 protein, humanBRCA2 ProteinBRCA2 protein, humanBRCA1 and BRCA2 genesBreast cancerHereditaryPathogenic variantTriple-negative subtype

Identifiers

PMID31331294
PMCPMC6647062
OpenAlexW2963372022

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.