Evidence map›Paper›PMID 31330605›Full record

ArticlePhysical review. E2019

Learning moment closure in reaction-diffusion systems with spatial dynamic Boltzmann distributions.

Oliver K Ernst, Thomas M Bartol, Terrence J Sejnowski, Eric Mjolsness

Abstract read
In one paragraph

Article in Physical review. E, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Oliver K ErnstDepartment of Physics, University of California at San Diego, La Jolla, California 92093, USA.
Thomas M Bartol
Terrence J SejnowskiSalk Institute for Biological Studies, La Jolla, California 92037, USA and Division of Biological Sciences, University of California at San Diego, La Jolla, California 92093, USA.
Eric MjolsnessDepartments of Computer Science and Mathematics, and Institute for Genomics and Bioinformatics, University of California at Irvine, Irvine, 92697 California, USA.

Funding

TrainingP41GM103712 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FAEDER, JAMES · 2012 to 2021
$16.3M
Binding of synGAP to PDZ domains of PSD-95 and its role in Intellectual Disability and Autism Spectrum Disorders caused by synGAP haploinsufficiencyR01MH115456 · NIMH · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI KENNEDY, MARY B · 2018 to 2021
$1.7M
Machine Learning for Generalized Multiscale ModelingR56AG059602 · NIA · UNIVERSITY OF CALIFORNIA-IRVINE · PI MJOLSNESS, ERIC D · 2018 to 2018
$619k
NIA NIH HHS R56 AG059602NIGMS NIH HHS P41 GM103712NIMH NIH HHS R01 MH115456
6 · The paper itself

Abstract

Many physical systems are described by probability distributions that evolve in both time and space. Modeling these systems is often challenging due to their large state space and analytically intractable or computationally expensive dynamics. To address these problems, we study a machine-learning approach to model reduction based on the Boltzmann machine. Given the form of the reduced model Boltzmann distribution, we introduce an autonomous differential equation system for the interactions appearing in the energy function. The reduced model can treat systems in continuous space (described by continuous random variables), for which we formulate a variational learning problem using the adjoint method to determine the right-hand sides of the differential equations. This approach can be used to enforce a reduced physical model by a suitable parametrization of the differential equations. The parametrization we employ uses the basis functions from finite-element methods, which can be used to model any physical system. One application domain for such physics-informed learning algorithms is to modeling reaction-diffusion systems. We study a lattice version of the Rössler chaotic oscillator, which illustrates the accuracy of the moment closure approximation made by the method and its dimensionality reduction power.

Identifiers

PMID31330605
PMCPMC6852890

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.