Evidence map›Paper›PMID 31329860›Full record

ArticleIntegrative biology : quantitative biosciences from nano to macro2019

Adhesive dynamics simulations quantitatively predict effects of kindlin-3 deficiency on T-cell homing.

Nicholas R Anderson, Dooyoung Lee, Daniel A Hammer

Open access · greenAbstract read
In one paragraph

Article in Integrative biology : quantitative biosciences from nano to macro, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Nicholas R AndersonDepartment of Chemical and Biomolecular Engineering, University of Pennsylvania, Philadelphia, PA, USA.
Dooyoung LeeDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA, USA.
Daniel A HammerDepartment of Chemical and Biomolecular Engineering, University of Pennsylvania, Philadelphia, PA, USA.
University of Pennsylvania · US

Funding

The mechanochemical control of T-cell directional migration under flowR01GM123019 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI HAMMER, DANIEL A · 2017 to 2020
$1.7M
NIGMS NIH HHS R01 GM123019
6 · The paper itself

Abstract

Leukocyte adhesion is important for the proper functioning of the immune system. While leukocyte homing is mediated by adhesion receptors, the activation of these receptors is modulated by intracellular signaling molecules. In Leukocyte Adhesion Deficiency Type 3, the loss of the kindlin-3 prevents the activation of Leukocyte Function-associated Antigen-1 (LFA-1), which leads to a defect in adhesion, causing recurrent infections and bleeding disorders. Here, we use Integrated Signaling Adhesive Dynamics, a computer model of leukocyte rolling and adhesion combined with a simulated intracellular signaling cascade, to predict the response of T cells to depletion of kindlin-3. Our model predicts that cell adhesion is hypersensitive to the amount of kindlin-3 in the cell, while the rolling velocity is independent of kindlin-3 concentration. In addition, our simulation predicted that the time to stop, an important metric of adhesion, would increase with decreasing kindlin-3 expression. These predictions were confirmed experimentally in experiments using Jurkat cells with reduced expression of kindlin-3. These results suggest that Adhesive Dynamics is a versatile tool for quantifying adhesion in the immune response and predicting the effects of engineering cellular components.

Indexed as

Cell AdhesionLeukocyte RollingAdsorptionAlgorithmsChemokine CXCL12Computer SimulationGene Knockdown TechniquesHumansImmune SystemJurkat CellsKineticsLeukocyte-Adhesion Deficiency SyndromeLeukocytesLymphocyte Function-Associated Antigen-1Membrane ProteinsNeoplasm ProteinsChemokine CXCL12CXCL12 protein, humanFERMT3 protein, humanLymphocyte Function-Associated Antigen-1Membrane ProteinsNeoplasm Proteins

Identifiers

PMID31329860
PMCPMC7309535
OpenAlexW2964292427

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.