Evidence map›Paper›PMID 31329606›Full record

ArticlePloS one2019

Preservation of cellular nano-architecture by the process of chemical fixation for nanopathology.

Xiang Zhou, Scott Gladstein, Luay M Almassalha, Yue Li, Adam Eshein, Lusik Cherkezyan, Parvathi Viswanathan, Hariharan Subramanian, Igal Szleifer, Vadim Backman

Abstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Chromosome inner structure investigation by electron tomography and electron diffraction in a transmission electron microscope.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2021
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Xiang ZhouDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, United States of America.
Scott GladsteinDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, United States of America.ORCID 0000-0002-0398-7512
Luay M AlmassalhaDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, United States of America.
Yue LiDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, United States of America.
Adam EsheinDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, United States of America.
Lusik CherkezyanDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, United States of America.
Parvathi ViswanathanDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, United States of America.
Hariharan SubramanianDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, United States of America.
Igal SzleiferDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, United States of America.ORCID 0000-0002-8708-0335
Vadim BackmanDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, United States of America.

Funding

Reducing Cancer Transcriptional Heterogeneity through Regulation of Chromatin StructureR01CA228272 · NCI · NORTHWESTERN UNIVERSITY · PI BACKMAN, VADIM, ROY, HEMANT K. · 2018 to 2022
$3.2M
Risk-stratification of Prostate Cancers via Field Carcinogenesis NanocytologyR01CA200064 · NCI · NORTHWESTERN UNIVERSITY · PI BACKMAN, VADIM, CRAWFORD, SUSAN E. · 2015 to 2019
$3.1M
Nanoscale/Molecular analysis of Fecal Colonocytes for Colorectal Cancer ScreeningR01CA165309 · NCI · NORTHWESTERN UNIVERSITY · PI BACKMAN, VADIM, ROY, HEMANT K. · 2012 to 2016
$2.8M
Optical Nanoscale Analysis of Buccal Cells: Transforming Lung Cancer ScreeningR01CA155284 · NCI · NORTHWESTERN UNIVERSITY · PI BACKMAN, VADIM, ROY, HEMANT K. · 2011 to 2014
$2.3M
NCI NIH HHS R01 CA155284NCI NIH HHS R01 CA165309NCI NIH HHS R01 CA200064NCI NIH HHS R01 CA228272
6 · The paper itself

Abstract

Transformation in chromatin organization is one of the most universal markers of carcinogenesis. Microscale chromatin alterations have been a staple of histopathological diagnosis of neoplasia, and nanoscale alterations have emerged as a promising marker for cancer prognostication and the detection of predysplastic changes. While numerous methods have been developed to detect these alterations, most methods for sample preparation remain largely validated via conventional microscopy and have not been examined with nanoscale sensitive imaging techniques. For these nanoscale sensitive techniques to become standard of care screening tools, new histological protocols must be developed that preserve nanoscale information. Partial Wave Spectroscopic (PWS) microscopy has recently emerged as a novel imaging technique sensitive to length scales ranging between 20 and 200 nanometers. As a label-free, high-throughput, and non-invasive imaging technique, PWS microscopy is an ideal tool to quantify structural information during sample preparation. Therefore, in this work we applied PWS microscopy to systematically evaluate the effects of cytological preparation on the nanoscales changes of chromatin using two live cell models: a drug-based model of Hela cells differentially treated with daunorubicin and a cell line comparison model of two cells lines with inherently distinct chromatin organizations. Notably, we show that existing cytological preparation can be modified in order to maintain clinically relevant nanoscopic differences, paving the way for the emerging field of nanopathology.

Indexed as

CarcinogenesisCell LineChromatinEthanolFixativesHeLa CellsHistological TechniquesHumansMicroscopyNanotechnologyPreservation, BiologicalSpectrum AnalysisTissue FixationChromatinEthanolFixatives

Identifiers

PMID31329606
PMCPMC6645510

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.