ArticleDatabase : the journal of biological databases and curation2019
Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases.
Article in Database : the journal of biological databases and curation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
23 citing papers in PubMed.
- Genome Database for Vaccinium: a knowledgebase for genetics, genomics, and breeding research.Genetics · 2026Article
- Genome Database for Vaccinium: a knowledgebase for genetics, genomics, and breeding research.Genetics · 2026Article
- GenomeDepot: data management system for microbial comparative genomics.Bioinformatics advances · 2026Article
- Building resource-efficient community databases using open-source software.Database : the journal of biological databases and curation · 2025Article
- Building resource-efficient community databases using open-source software.Database : the journal of biological databases and curation · 2025Article
- Sugar assimilation underlying dietary evolution of Neotropical bats.Nature ecology & evolution · 2024Article
- Article
- CuGenDBv2: an updated database for cucurbit genomics.Nucleic acids research · 2023Article
- Review
- CarrotOmics: a genetics and comparative genomics database for carrot (Daucus carota).Database : the journal of biological databases and curation · 2022Article
- Genomic and Bioinformatic Resources for Perennial Fruit Species.Current genomics · 2022Review
- Doing Genetic and Genomic Biology Using the Legume Information System and Associated Resources.Methods in molecular biology (Clifton, N.J.) · 2022Article
- The United States Swine Pathogen Database: integrating veterinary diagnostic laboratory sequence data to monitor emerging pathogens of swine.Database : the journal of biological databases and curation · 2021Article
- Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases.Briefings in bioinformatics · 2021Article
- The Breeding Information Management System (BIMS): an online resource for crop breeding.Database : the journal of biological databases and curation · 2021Article
- A PostgreSQL Tripal solution for large-scale genotypic and phenotypic data.Database : the journal of biological databases and curation · 2021Article
- CorkOakDB-The Cork Oak Genome Database Portal.Database : the journal of biological databases and curation · 2020Article
- CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa.Database : the journal of biological databases and curation · 2020Article
- Machado: Open source genomics data integration framework.GigaScience · 2020Article
- Tripal EUtils: a Tripal module to increase exchange and reuse of genome assembly metadata.Database : the journal of biological databases and curation · 2020Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
15 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Community biological databases provide an important online resource for both public and private data, analysis tools and community engagement. These sites house genomic, transcriptomic, genetic, breeding and ancillary data for specific species, families or clades. Due to the complexity and increasing quantities of these data, construction of online resources is increasingly difficult especially with limited funding and access to technical expertise. Furthermore, online repositories are expected to promote FAIR data principles (findable, accessible, interoperable and reusable) that presents additional challenges. The open-source Tripal database toolkit seeks to mitigate these challenges by creating both the software and an interactive community of developers for construction of online community databases. Additionally, through coordinated, distributed co-development, Tripal sites encourage community-wide sustainability. Here, we report the release of Tripal version 3 that improves data accessibility and data sharing through systematic use of controlled vocabularies (CVs). Tripal uses the community-developed Chado database as a default data store, but now provides tools to support other data stores, while ensuring that CVs remain the central organizational structure for the data. A new site developer can use Tripal to develop a basic site with little to no programming, with the ability to integrate other data types using extension modules and the Tripal application programming interface. A thorough online User's Guide and Developer's Handbook are available at http://tripal.info, providing download, installation and step-by-step setup instructions.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.