Evidence map›Paper›PMID 31327695›Full record

ArticleEBioMedicine2019

Gut microbiome and serum metabolome analyses identify molecular biomarkers and altered glutamate metabolism in fibromyalgia.

Marc Clos-Garcia, Naiara Andrés-Marin, Gorka Fernández-Eulate, Leticia Abecia, José L Lavín, Sebastiaan van Liempd, Diana Cabrera, Félix Royo, Alejandro Valero, Nerea Errazquin and 12 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in EBioMedicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05921409 (Development of a New Tool for the Diagnosis and Monitoring of Fibromyalgia "FIBROKIT"), which is not on this map. Cited by 139 papers, 8 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
139citing papers in PubMed, 8 pooled it
14.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05921409 naunknown statusnot on this mapstarted 2021, after this paper: background citation

Development of a New Tool for the Diagnosis and Monitoring of Fibromyalgia "FIBROKIT"

TypeinterventionalSponsorPronacera Therapeutics SLRan2021 to 2023Enrolled250ConditionsFibromyalgiaArmsExtra Virgin Olive oil-supplemented Mediterranean Diet Intervention, Olive oil-supplemented Mediterranean Diet Intervention
3 · Its place in the literature

Who cites it

139 citing papers in PubMed, 8 syntheses or guidelines pooled it, 198 citations in OpenAlex.

  1. Global Microbiome: Core and Unique Signatures Across Diverse Populations.International journal of molecular sciences · 2026
    Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Enterochromaffin Cells: Sentinels to Gut Microbiota in Hyperalgesia?Frontiers in cellular and infection microbiology · 2021
    Pooled it
  7. Pooled it
  8. Pooled it
  9. Trial
  10. Trial
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Review

79 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 8 institutions in 2 countries.

Marc Clos-GarciaExosomes Laboratory, CIC bioGUNE, CIBERehd, Bizkaia Technology Park, Derio, Spain; Department of Gastroenterology, Instituto Biodonostia, Universidad del País Vasco (UPV/EHU), CIBERehd (Centro de investigación en red de enfermedades hepáticas y digestiva) San Sebastian, Spain. Electronic address: mclos.biodonostia@cicbiogune.es.
Naiara Andrés-MarinDepartment of Neurology, Donostia University Hospital, San Sebastian, Spain.
Gorka Fernández-EulateDepartment of Neurology, Donostia University Hospital, San Sebastian, Spain; Neuroscience Area, Biodonostia Health Research Institute, San Sebastian, Spain. Electronic address: gorka.fernandezgarciadeeulate@osakidetza.net.
Leticia AbeciaMacrophage and Tick Vaccine Laboratory, CIC bioGUNE, Bizkaia Technology Park, Derio, Spain. Electronic address: labecia@cicbiogune.es.
José L LavínBioinformatics Unit, CIC bioGUNE, Bizkaia Technology Park, Derio, Spain. Electronic address: jllavin@cicbiogune.es.
Sebastiaan van LiempdMetabolomics Platform, CIC bioGUNE, CIBERehd, Bizkaia Technology Park, Derio, Spain. Electronic address: smvanliempd@cicbiogune.es.
Diana CabreraMetabolomics Platform, CIC bioGUNE, CIBERehd, Bizkaia Technology Park, Derio, Spain. Electronic address: dcabrera@cicbiogune.es.
Félix RoyoExosomes Laboratory, CIC bioGUNE, CIBERehd, Bizkaia Technology Park, Derio, Spain. Electronic address: froyo.ciberehd@cicbiogune.es.
Alejandro ValeroDepartment of Rheumatology, Donostia University Hospital, San Sebastian, Spain. Electronic address: jesusalejandro.valerojaimes@osakidetza.eus.
Nerea ErrazquinDepartment of Rheumatology, Gipuzcoa Policlinic, San Sebastian, Spain. Electronic address: nerea.errazquinaguirre@osakidetza.eus.
María Cristina Gómez VegaDepartment of Anesthesiology and Pain Unit, Hospital Galdakao-Usansolo, Bizkaia, Spain.
Leila GovillardDeusto University, San Sebastian, Spain. Electronic address: leila.govillard@deusto.es.
Michael R TackettAbcam, Cambridge, MA, United States. Electronic address: michael.tackett@abcam.com.
Genesis TejadaAbcam, Cambridge, MA, United States. Electronic address: genesis.tejada@abcam.com.
Esperanza GónzalezExosomes Laboratory, CIC bioGUNE, CIBERehd, Bizkaia Technology Park, Derio, Spain. Electronic address: egonzalez@cicbiogune.es.
Juan AnguitaMacrophage and Tick Vaccine Laboratory, CIC bioGUNE, Bizkaia Technology Park, Derio, Spain; IKERBASQUE, Basque Foundation for Science, Bilbao, Spain. Electronic address: janguita@cicbiogune.es.
Luis BujandaDepartment of Gastroenterology, Instituto Biodonostia, Universidad del País Vasco (UPV/EHU), CIBERehd (Centro de investigación en red de enfermedades hepáticas y digestiva) San Sebastian, Spain. Electronic address: luis.bujandafernandezdepierola@osakidetza.eus.
Ana María Callejo OrcasitasDepartment of Anesthesiology and Pain Unit, Hospital Galdakao-Usansolo, Bizkaia, Spain. Electronic address: mariacristina.gomezvega@osakidetza.eus.
Ana M AransayGenome Analysis Platform, CIC bioGUNE, CIBERehd, Bizkaia Technology Park, Derio, Spain. Electronic address: anamariafrancisca.callejoorcasitas@osakidetza.eus.
Olga MaízDepartment of Rheumatology, Donostia University Hospital, San Sebastian, Spain. Electronic address: olga.maizalonso@osakidetza.eus.
Adolfo López de MunainDepartment of Neurology, Donostia University Hospital, San Sebastian, Spain; Neuroscience Area, Biodonostia Health Research Institute, San Sebastian, Spain; Network Center for Biomedical Research in Neurodegenerative Diseases (CIBERNED), Spain; Department of Neurosciences, University of Basque Country UPV/EHU, San Sebastian, Spain. Electronic address: ADOLFOJOSE.LOPEZDEMUNAINARREGUI@osakidetza.eus.
Juan Manuel Falcón-PérezExosomes Laboratory, CIC bioGUNE, CIBERehd, Bizkaia Technology Park, Derio, Spain; Metabolomics Platform, CIC bioGUNE, CIBERehd, Bizkaia Technology Park, Derio, Spain; IKERBASQUE, Basque Foundation for Science, Bilbao, Spain. Electronic address: jfalcon@cicbiogune.es.
CIC bioGUNE · ESBiogipuzkoa Health Research Institute · ESUniversity of the Basque Country · ESAbcam (United States) · USHospital de Galdakao · ESIkerbasque · ESPoliclínica Gipuzkoa · ESUniversidad de Deusto · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFibromyalgia is a complex, relatively unknown disease characterised by chronic, widespread musculoskeletal pain. The gut-brain axis connects the gut microbiome with the brain through the enteric nervous system (ENS); its disruption has been associated with psychiatric and gastrointestinal disorders. To gain an insight into the pathogenesis of fibromyalgia and identify diagnostic biomarkers, we combined different omics techniques to analyse microbiome and serum composition.

methodsWe collected faeces and blood samples to study the microbiome, the serum metabolome and circulating cytokines and miRNAs from a cohort of 105 fibromyalgia patients and 54 age- and environment-matched healthy individuals. We sequenced the V3 and V4 regions of the 16S rDNA gene from faeces samples. UPLC-MS metabolomics and custom multiplex cytokine and miRNA analysis (FirePlex™ technology) were used to examine sera samples. Finally, we combined the different data types to search for potential biomarkers.

resultsWe found that the diversity of bacteria is reduced in fibromyalgia patients. The abundance of the Bifidobacterium and Eubacterium genera (bacteria participating in the metabolism of neurotransmitters in the host) in these patients was significantly reduced. The serum metabolome analysis revealed altered levels of glutamate and serine, suggesting changes in neurotransmitter metabolism. The combined serum metabolomics and gut microbiome datasets showed a certain degree of correlation, reflecting the effect of the microbiome on metabolic activity. We also examined the microbiome and serum metabolites, cytokines and miRNAs as potential sources of molecular biomarkers of fibromyalgia.

conclusionsOur results show that the microbiome analysis provides more significant biomarkers than the other techniques employed in the work. Gut microbiome analysis combined with serum metabolomics can shed new light onto the pathogenesis of fibromyalgia. We provide a list of bacteria whose abundance changes in this disease and propose several molecules as potential biomarkers that can be used to evaluate the current diagnostic criteria.

Indexed as

Gastrointestinal MicrobiomeMetabolomeMetabolomicsAdultAgedBiomarkersChromatography, High Pressure LiquidComputational BiologyCytokinesFemaleFibromyalgiaGlutamatesHumansMaleMetagenomeMetagenomicsBiomarkersCytokinesGlutamatesRNA, Ribosomal, 16SCytokinesFibromyalgiaGut microbiotaMetabolomicsmiRNAsOmics integrationPain

Identifiers

PMID31327695
PMCPMC6710987
OpenAlexW2963045319

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.