Evidence map›Paper›PMID 31325428›Full record

ArticleGastroenterology2019

Epithelial Indoleamine 2,3-Dioxygenase 1 Modulates Aryl Hydrocarbon Receptor and Notch Signaling to Increase Differentiation of Secretory Cells and Alter Mucus-Associated Microbiota.

David M Alvarado, Baosheng Chen, Micah Iticovici, Ameet I Thaker, Nattalie Dai, Kelli L VanDussen, Nurmohammad Shaikh, Chai K Lim, Gilles J Guillemin, Phillip I Tarr and 1 more

Open access · greenAbstract read
In one paragraph

Article in Gastroenterology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed, 144 citations in OpenAlex.

  1. Trial
  2. Review
  3. The Role of the Notch1 Signaling Pathway in the Pathogenesis and Treatment of Diabetic Foot: A Review.Diabetes therapy : research, treatment and education of diabetes and related disorders · 2026
    Review
  4. Article
  5. Review
  6. IBD risk locus rs1077773 enhances aryl hydrocarbon receptor activity and modulates immune cell function in vitro.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2026
    Article
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40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

David M AlvaradoDivision of Gastroenterology, Washington University in St Louis School of Medicine, St Louis, Missouri.
Baosheng ChenDivision of Gastroenterology, Washington University in St Louis School of Medicine, St Louis, Missouri.
Micah IticoviciDivision of Gastroenterology, Washington University in St Louis School of Medicine, St Louis, Missouri.
Ameet I ThakerDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas.
Nattalie DaiWashington University in St Louis, St Louis, Missouri.
Kelli L VanDussenDepartment of Pathology and Immunology, Washington University in St Louis School of Medicine, St Louis, Missouri.
Nurmohammad ShaikhDivision of Pediatric Gastroenterology, Hepatology, and Nutrition, Washington University in St Louis School of Medicine, St Louis, Missouri.
Chai K LimDepartment of Biomedical Sciences, Faculty of Medicine and Health Sciences, Macquarie University, Australia.
Gilles J GuilleminDepartment of Biomedical Sciences, Faculty of Medicine and Health Sciences, Macquarie University, Australia.
Phillip I TarrDivision of Pediatric Gastroenterology, Hepatology, and Nutrition, Washington University in St Louis School of Medicine, St Louis, Missouri.
Matthew A CiorbaDivision of Gastroenterology, Washington University in St Louis School of Medicine, St Louis, Missouri. Electronic address: mciorba@wustl.edu.
Washington University in St. Louis · USMacquarie University · AUThe University of Texas Southwestern Medical Center · US

Funding

Washington University DDRCC Supplemental Equipment RequestP30DK052574 · NIDDK · WASHINGTON UNIVERSITY · PI Nicholas O. Davidson · 2000 to 2026
$30.8M
Pediatric Gastroenterology Research Training ProgramT32DK077653 · NIDDK · WASHINGTON UNIVERSITY · PI PHILLIP I TARR · 2007 to 2026
$5.8M
TARGETING TRYPTOPHAN METABOLISM IN COLITIS ASSOCIATED CANCERR01DK109384 · NIDDK · WASHINGTON UNIVERSITY · PI CIORBA, MATTHEW AARON · 2016 to 2020
$1.7M
DEFINING THE BASIS OF EPITHELIAL DEFECTS IN CROHN'S DISEASE PATIENTSK01DK109081 · NIDDK · WASHINGTON UNIVERSITY · PI VANDUSSEN, KELLI LYNN · 2016 to 2020
$737k
WHOLE SLIDE IMAGING SYSTEM FOR TRANSLATIONAL NEUROSCIENCES10RR027552 · NCRR · WASHINGTON UNIVERSITY · PI LEE, JIN-MOO · 2010 to 2010
$275k
NCRR NIH HHS S10 RR027552NIDDK NIH HHS K01 DK109081NIDDK NIH HHS P30 DK052574NIDDK NIH HHS R01 DK109384NIDDK NIH HHS T32 DK077653
6 · The paper itself

Abstract

BACKGROUND &

aimsInflammation, injury, and infection up-regulate expression of the tryptophan metabolizing enzyme indoleamine 2,3-dioxygenase 1 (IDO1) in the intestinal epithelium. We studied the effects of cell-specific IDO1 expression in the epithelium at baseline and during intestinal inflammation in mice.

methodsWe generated transgenic mice that overexpress fluorescence-tagged IDO1 in the intestinal epithelium under control of the villin promoter (IDO1-TG). We generated intestinal epithelial spheroids from mice with full-length Ido1 (controls), disruption of Ido1 (knockout mice), and IDO1-TG and analyzed them for stem cell and differentiation markers by real-time polymerase chain reaction, immunoblotting, and immunofluorescence. Some mice were gavaged with enteropathogenic Escherichia coli (E2348/69) to induce infectious ileitis, and ileum contents were quantified by polymerase chain reaction. Separate sets of mice were given dextran sodium sulfate or 2,4,6-trinitrobenzenesulfonic acid to induce colitis; intestinal tissues were analyzed by histology. We utilized published data sets GSE75214 and GDS2642 of RNA expression data from ilea of healthy individuals undergoing screening colonoscopies (controls) and patients with Crohn's disease.

resultsHistologic analysis of small intestine tissues from IDO1-TG mice revealed increases in secretory cells. Enteroids derived from IDO1-TG intestine had increased markers of stem, goblet, Paneth, enteroendocrine, and tuft cells, compared with control enteroids, with a concomitant decrease in markers of absorptive cells. IDO1 interacted non-enzymatically with the aryl hydrocarbon receptor to inhibit activation of NOTCH1. Intestinal mucus layers from IDO1-TG mice were 2-fold thicker than mucus layers from control mice, with increased proportions of Akkermansia muciniphila and Mucispirillum schaedleri. Compared to controls, IDO1-TG mice demonstrated an 85% reduction in ileal bacteria (P = .03) when challenged with enteropathogenic E coli, and were protected from immune infiltration, crypt dropout, and ulcers following administration of dextran sodium sulfate or 2,4,6-trinitrobenzenesulfonic acid. In ilea of Crohn's disease patients, increased expression of IDO1 correlated with increased levels of MUC2, LYZ1, and aryl hydrocarbon receptor, but reduced levels of SLC2A5.

conclusionsIn mice, expression of IDO1 in the intestinal epithelial promotes secretory cell differentiation and mucus production; levels of IDO1 are positively correlated with secretory cell markers in ilea of healthy individuals and Crohn's disease patients. We propose that IDO1 contributes to intestinal homeostasis.

Indexed as

Cell DifferentiationGastrointestinal MicrobiomeAnimalsBacteriaBasic Helix-Loop-Helix ProteinsCase-Control StudiesCell LineCell LineageDisease Models, AnimalEpithelial CellsGenotypeHumansIndoleamine-Pyrrole 2,3,-DioxygenaseInflammatory Bowel DiseasesIntestinal MucosaMice, KnockoutAHR protein, humanAhr protein, mouseBasic Helix-Loop-Helix ProteinsIDO1 protein, humanIDO1 protein, mouseIndoleamine-Pyrrole 2,3,-DioxygenaseReceptors, Aryl HydrocarbonReceptors, NotchKynurenineMetabolismMicrobiomeOrganoidsUlcerative Colitis

Identifiers

PMID31325428
PMCPMC6756966
OpenAlexW2958513494

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.