Evidence map›Paper›PMID 31325164›Full record

ArticleThe Journal of animal ecology2019

Host genetics and geography influence microbiome composition in the sponge Ircinia campana.

Sarah M Griffiths, Rachael E Antwis, Luca Lenzi, Anita Lucaci, Donald C Behringer, Mark J Butler, Richard F Preziosi

Abstract read
In one paragraph

Article in The Journal of animal ecology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sarah M GriffithsEcology and Environment Research Centre, Manchester Metropolitan University, Manchester, UK.ORCID 0000-0003-4743-049X
Rachael E AntwisSchool of Environment and Life Sciences, University of Salford, Salford, UK.ORCID 0000-0002-8849-8194
Luca LenziCentre for Genomic Research, Institute of Integrative Biology, University of Liverpool, Liverpool, UK.
Anita LucaciCentre for Genomic Research, Institute of Integrative Biology, University of Liverpool, Liverpool, UK.
Donald C BehringerFisheries and Aquatic Sciences, University of Florida, Gainesville, FL, USA.
Mark J ButlerDepartment of Biological Sciences, Old Dominion University, Norfolk, VA, USA.
Richard F PreziosiEcology and Environment Research Centre, Manchester Metropolitan University, Manchester, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Marine sponges are hosts to large, diverse communities of microorganisms. These microbiomes are distinct among sponge species and from seawater bacterial communities, indicating a key role of host identity in shaping its resident microbial community. However, the factors governing intraspecific microbiome variability are underexplored and may shed light on the evolutionary and ecological relationships between host and microbiome. Here, we examined the influence of genetic variation and geographic location on the composition of the Ircinia campana microbiome. We developed new microsatellite markers to genotype I. campana from two locations in the Florida Keys, USA, and characterized their microbiomes using V4 16S rRNA amplicon sequencing. We show that microbial community composition and diversity is influenced by host genotype, with more genetically similar sponges hosting more similar microbial communities. We also found that although I. campana was not genetically differentiated between sites, microbiome composition differed by location. Our results demonstrate that both host genetics and geography influence the composition of the sponge microbiome. Host genotypic influence on microbiome composition may be due to stable vertical transmission of the microbial community from parent to offspring, making microbiomes more similar by descent. Alternatively, sponge genotypic variation may reflect variation in functional traits that influence the acquisition of environmental microbes. This study reveals drivers of microbiome variation within and among locations, and shows the importance of intraspecific variability in mediating eco-evolutionary dynamics of host-associated microbiomes.

Indexed as

MicrobiotaPoriferaAnimalsFloridaGeographyPhylogenyRNA, Ribosomal, 16SRNA, Ribosomal, 16Sbacteriacore microbiomeeco-evolutionary dynamicsgenetic diversityhost-microbe interactionsmicrosatellitesPorifera

Identifiers

PMID31325164
PMCPMC6899969

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.