Evidence map›Paper›PMID 31324763›Full record

ArticleNature communications2019

Alternative splicing regulates stochastic NLRP3 activity.

Florian Hoss, James L Mueller, Francisca Rojas Ringeling, Juan F Rodriguez-Alcazar, Rebecca Brinkschulte, Gerald Seifert, Rainer Stahl, Lori Broderick, Chris D Putnam, Richard D Kolodner and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 66 citations in OpenAlex.

  1. Innate immunity: current understandings and future perspectives.Signal transduction and targeted therapy · 2026
    Review
  2. Article
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  5. An overview of human inflammasomes: Activation and regulation.Journal of immunology (Baltimore, Md. : 1950) · 2026
    Review
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  17. Article
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  19. Get Spliced: Uniting Alternative Splicing and Arthritis.International journal of molecular sciences · 2024
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Florian HossInstitute of Innate Immunity, University Hospital, University of Bonn, 53127, Bonn, Germany.ORCID http://orcid.org/0000-0002-9231-5848
James L MuellerUniversity of California, San Diego School of Medicine, La Jolla, CA, 92093, USA.
Francisca Rojas RingelingGene Center, Ludwig-Maximilians-Universität München, 81377, Munich, Germany.ORCID http://orcid.org/0000-0001-8776-9768
Juan F Rodriguez-AlcazarInstitute of Innate Immunity, University Hospital, University of Bonn, 53127, Bonn, Germany.
Rebecca BrinkschulteInstitute of Structural Biology, University Hospital, University of Bonn, 53127, Bonn, Germany.
Gerald SeifertMedical Faculty, Institute of Cellular Neurosciences, University of Bonn, 53127, Bonn, Germany.
Rainer StahlInstitute of Innate Immunity, University Hospital, University of Bonn, 53127, Bonn, Germany.
Lori BroderickUniversity of California, San Diego School of Medicine, La Jolla, CA, 92093, USA.
Chris D PutnamUniversity of California, San Diego School of Medicine, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0002-6145-1265
Richard D KolodnerUniversity of California, San Diego School of Medicine, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0002-4806-8384
Stefan CanzarGene Center, Ludwig-Maximilians-Universität München, 81377, Munich, Germany.ORCID http://orcid.org/0000-0003-4719-8010
Matthias GeyerInstitute of Structural Biology, University Hospital, University of Bonn, 53127, Bonn, Germany.
Hal M HoffmanUniversity of California, San Diego School of Medicine, La Jolla, CA, 92093, USA. hahoffman@ucsd.edu.
Eicke LatzInstitute of Innate Immunity, University Hospital, University of Bonn, 53127, Bonn, Germany. eicke.latz@uni-bonn.de.ORCID http://orcid.org/0000-0003-1488-5666
University of Bonn · DEUniversity of California San Diego · USLudwig Cancer Research · BELudwig-Maximilians-Universität München · DEUniversity of Massachusetts Chan Medical School · US

Funding

Molecular Genetics and Immunoregulatory mechanisms of PFAPA syndromeK08HD075830 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BRODERICK, LORI · 2014 to 2018
$769k
NICHD NIH HHS K08 HD075830
6 · The paper itself

Abstract

Leucine-rich repeat (LRR) domains are evolutionarily conserved in proteins that function in development and immunity. Here we report strict exonic modularity of LRR domains of several human gene families, which is a precondition for alternative splicing (AS). We provide evidence for AS of LRR domain within several Nod-like receptors, most prominently the inflammasome sensor NLRP3. Human NLRP3, but not mouse NLRP3, is expressed as two major isoforms, the full-length variant and a variant lacking exon 5. Moreover, NLRP3 AS is stochastically regulated, with NLRP3 ∆ exon 5 lacking the interaction surface for NEK7 and hence loss of activity. Our data thus reveals unexpected regulatory roles of AS through differential utilization of LRRs modules in vertebrate innate immunity.

Indexed as

Alternative SplicingAmino Acid SequenceAnimalsCells, CulturedExonsHEK293 CellsHumansImmunity, InnateInflammasomesMacrophagesNeoplasm ProteinsNIMA-Related KinasesNLR Family, Pyrin Domain-Containing 3 ProteinProtein DomainsProtein IsoformsStochastic ProcessesInflammasomesLRPPRC protein, humanNEK7 protein, humanNeoplasm ProteinsNIMA-Related KinasesNLR Family, Pyrin Domain-Containing 3 ProteinNLRP3 protein, humanProtein Isoforms

Identifiers

PMID31324763
PMCPMC6642158
OpenAlexW2963145401

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.