Evidence map›Paper›PMID 31324762›Full record

ArticleNature communications2019

Determinants of HIV-1 reservoir size and long-term dynamics during suppressive ART.

Nadine Bachmann, Chantal von Siebenthal, Valentina Vongrad, Teja Turk, Kathrin Neumann, Niko Beerenwinkel, Jasmina Bogojeska, Jaques Fellay, Volker Roth, Yik Lim Kok and 17 more

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 136 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
136citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

136 citing papers in PubMed, 3 syntheses or guidelines pooled it.

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76 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Nadine BachmannDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091, Zurich, Switzerland.ORCID http://orcid.org/0000-0002-7303-9542
Chantal von SiebenthalDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091, Zurich, Switzerland.
Valentina VongradDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091, Zurich, Switzerland.ORCID http://orcid.org/0000-0002-3680-4583
Teja TurkDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091, Zurich, Switzerland.ORCID http://orcid.org/0000-0003-3065-8578
Kathrin NeumannDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091, Zurich, Switzerland.ORCID http://orcid.org/0000-0001-5034-6999
Niko BeerenwinkelDepartment of Biosystems Science and Engineering, ETH Zurich, 4058, Basel, Switzerland.ORCID http://orcid.org/0000-0002-0573-6119
Jasmina BogojeskaIBM Research-Zurich, 8803, Rüschlikon, Switzerland.
Jaques FellaySchool of Life Sciences, EPFL, 1015, Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-8240-939X
Volker RothDepartment of Mathematics and Computer Science, University of Basel, 4001, Basel, Switzerland.ORCID http://orcid.org/0000-0003-0991-0273
Yik Lim KokDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091, Zurich, Switzerland.
Christian W ThorballSchool of Life Sciences, EPFL, 1015, Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-6869-6943
Alessandro BorghesiSchool of Life Sciences, EPFL, 1015, Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-8773-9144
Sonali ParbhooDepartment of Mathematics and Computer Science, University of Basel, 4001, Basel, Switzerland.ORCID http://orcid.org/0000-0001-8400-3732
Mario WieserDepartment of Mathematics and Computer Science, University of Basel, 4001, Basel, Switzerland.ORCID http://orcid.org/0000-0002-8737-3605
Jürg BöniInstitute of Medical Virology, University of Zurich, 8057, Zurich, Switzerland.ORCID http://orcid.org/0000-0001-7925-4852
Matthieu PerreauDivision of Immunology and Allergy, Centre Hospitalier Universitaire Vaudois, University of Lausanne, 1015, Lausanne, Switzerland.
Thomas KlimkaitDivision Infection Diagnostics, Department Biomedicine-Petersplatz, University of Basel, 4001, Basel, Switzerland.ORCID http://orcid.org/0000-0003-4945-6511
Sabine YerlyDivision of Infectious Diseases and Laboratory of Virology, University Hospital Geneva, University of Geneva, 1211, Geneva, Switzerland.ORCID http://orcid.org/0000-0003-1668-696X
Manuel BattegayDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, 4031, Basel, Switzerland.
Andri RauchDepartment of Infectious Diseases, University Hospital Bern, 3010, Bern, Switzerland.ORCID http://orcid.org/0000-0001-5297-6062
Matthias HoffmannDivision of Infectious Diseases, Cantonal Hospital of St. Gallen, 9007, St. Gallen, Switzerland.ORCID http://orcid.org/0000-0002-8764-6861
Enos BernasconiInfectious Diseases Service, Regional Hospital, 6900, Lugano, Switzerland.ORCID http://orcid.org/0000-0002-9724-8373
Matthias CavassiniDivision of Infectious Diseases, Centre Hospitalier Universitaire Vaudois, University of Lausanne, 1015, Lausanne, Switzerland.
Roger D KouyosDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091, Zurich, Switzerland.ORCID http://orcid.org/0000-0002-9220-8348
Huldrych F GünthardDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091, Zurich, Switzerland. huldrych.guenthard@usz.ch.ORCID http://orcid.org/0000-0002-1142-6723
Karin J MetznerDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091, Zurich, Switzerland.ORCID http://orcid.org/0000-0003-4862-1503
Swiss HIV Cohort Study

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The HIV-1 reservoir is the major hurdle to a cure. We here evaluate viral and host characteristics associated with reservoir size and long-term dynamics in 1,057 individuals on suppressive antiretroviral therapy for a median of 5.4 years. At the population level, the reservoir decreases with diminishing differences over time, but increases in 26.6% of individuals. Viral blips and low-level viremia are significantly associated with slower reservoir decay. Initiation of ART within the first year of infection, pretreatment viral load, and ethnicity affect reservoir size, but less so long-term dynamics. Viral blips and low-level viremia are thus relevant for reservoir and cure studies.

Indexed as

Disease ReservoirsAdultAnti-HIV AgentsFemaleHIV-1HIV InfectionsHumansLongitudinal StudiesMaleMiddle AgedModels, BiologicalRNA, ViralViral LoadViremiaVirus LatencyAnti-HIV AgentsRNA, Viral

Identifiers

PMID31324762
PMCPMC6642170

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.