Evidence map›Paper›PMID 31324758›Full record

ArticleNature communications2019

Subtype-specific secretomic characterization of pulmonary neuroendocrine tumor cells.

Xu-Dong Wang, Rongkuan Hu, Qing Ding, Trisha K Savage, Kenneth E Huffman, Noelle Williams, Melanie H Cobb, John D Minna, Jane E Johnson, Yonghao Yu

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 41 citations in OpenAlex.

  1. Pooled it
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  4. Proteomics appending a complementary dimension to precision oncotherapy.Computational and structural biotechnology journal · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Xu-Dong WangDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA.ORCID http://orcid.org/0000-0002-8265-1485
Rongkuan HuDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA.
Qing DingDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA.
Trisha K SavageDepartment of Neuroscience, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA.ORCID http://orcid.org/0000-0002-9953-6002
Kenneth E HuffmanSimmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA.
Noelle WilliamsDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA.
Melanie H CobbSimmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA.
John D MinnaSimmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA.
Jane E JohnsonDepartment of Neuroscience, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA.ORCID http://orcid.org/0000-0002-8605-2746
Yonghao YuDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA. yonghao.yu@utsouthwestern.edu.
The University of Texas Southwestern Medical Center · USSouthwestern Medical Center · US

Funding

UNIVERSITY OF TEXAS--SPORE IN LUNG CANCERP50CA070907 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI HEYMACH, JOHN V., MINNA, JOHN D. · 1996 to 2024
$57.4M
Coordinating center for the NCI small cell lung cancer research consortiumU24CA213274 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Lauren Averett Byers, JOHN D. MINNA · 2017 to 2026
$12.9M
Developing ASCL1 and NeuroD1 lineage oncogene targeted therapy for small cell lung cancerU01CA213338 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI MINNA, JOHN D. · 2017 to 2021
$3.0M
Development of Risk and Early Detection Biomarker for Small Cell Lung CancerU01CA213285 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI HANASH, SAMIR M · 2017 to 2021
$2.6M
Molecular and Biochemical Basis of mTORC1-mediated Feedback LoopsR01GM114160 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI YU, YONGHAO · 2015 to 2019
$1.6M
Mass spectrometric approaches to protein ADP-ribosylationR01GM122932 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI YU, YONGHAO · 2017 to 2019
$1.1M
NCI NIH HHS P50 CA070907NCI NIH HHS U01 CA213285NCI NIH HHS U01 CA213338NCI NIH HHS U24 CA213274NIGMS NIH HHS R01 GM114160NIGMS NIH HHS R01 GM122932
6 · The paper itself

Abstract

Pulmonary neuroendocrine (NE) cancer, including small cell lung cancer (SCLC), is a particularly aggressive malignancy. The lineage-specific transcription factors Achaete-scute homolog 1 (ASCL1), NEUROD1 and POU2F3 have been reported to identify the different subtypes of pulmonary NE cancers. Using a large-scale mass spectrometric approach, here we perform quantitative secretome analysis in 13 cell lines that signify the different NE lung cancer subtypes. We quantify 1,626 proteins and identify IGFBP5 as a secreted marker for ASCL1

Indexed as

Biomarkers, TumorAnimalsAzepinesBasic Helix-Loop-Helix ProteinsCell Line, TumorCell SurvivalGene Expression Regulation, NeoplasticGene Knockdown TechniquesHumansInsulin-Like Growth Factor Binding Protein 5Lung NeoplasmsMiceMice, Inbred NODMice, SCIDNeoplasms, ExperimentalNeuroendocrine TumorsASCL1 protein, humanAzepinesBasic Helix-Loop-Helix ProteinsBiomarkers, TumorBMS 754807IGFBP5 protein, humanInsulin-Like Growth Factor Binding Protein 5(+)-JQ1 compoundNEUROD1 protein, humanOctamer Transcription FactorsPOU2F3 protein, humanPyrazolesReceptor, IGF Type 1Transcription FactorsTriazinesTriazoles

Identifiers

PMID31324758
PMCPMC6642156
OpenAlexW2963440086

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.